Literature DB >> 20827586

Identification of promoter regions and regulatory sites.

Victor V Solovyev1, Ilham A Shahmuradov, Asaf A Salamov.   

Abstract

Promoter sequences are the main regulatory elements of gene expression. Their recognition by computer algorithms is fundamental for understanding gene expression patterns, cell specificity and development. This chapter describes the advanced approaches to identify promoters in animal, plant and bacterial sequences. Also, we discuss an approach to identify statistically significant regulatory motifs in genomic sequences.

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Year:  2010        PMID： 20827586     DOI： 10.1007/978-1-60761-854-6_5

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  56 in total

1.  Interferons Induce Expression of SAMHD1 in Monocytes through Down-regulation of miR-181a and miR-30a.

Authors:  Maximilian Riess; Nina V Fuchs; Adam Idica; Matthias Hamdorf; Egbert Flory; Irene Munk Pedersen; Renate König
Journal:  J Biol Chem       Date:  2016-12-01       Impact factor: 5.157

Review 2.  Recent advances in the applications of promoter engineering for the optimization of metabolite biosynthesis.

Authors:  Ning Xu; Liang Wei; Jun Liu
Journal:  World J Microbiol Biotechnol       Date:  2019-01-31       Impact factor: 3.312

3.  Co-regulation analysis of co-expressed modules under cold and pathogen stress conditions in tomato.

Authors:  Davar Abedini; Sajad Rashidi Monfared
Journal:  Mol Biol Rep       Date:  2018-03-17       Impact factor: 2.316

4.  Use of a scaffold peptide in the biosynthesis of amino acid-derived natural products.

Authors:  Chi P Ting; Michael A Funk; Steve L Halaby; Zhengan Zhang; Tamir Gonen; Wilfred A van der Donk
Journal:  Science       Date:  2019-07-19       Impact factor: 47.728

5.  Genome-wide characterization of cis-acting DNA targets reveals the transcriptional regulatory framework of opaque2 in maize.

Authors:  Chaobin Li; Zhenyi Qiao; Weiwei Qi; Qian Wang; Yue Yuan; Xi Yang; Yuanping Tang; Bing Mei; Yuanda Lv; Han Zhao; Han Xiao; Rentao Song
Journal:  Plant Cell       Date:  2015-02-17       Impact factor: 11.277

6.  Evaluation of the diversity and phylogenetic implications of NAC transcription factor members of four reference species from the different embryophytic plant groups.

Authors:  Rakhi Chakraborty; Swarnendu Roy
Journal:  Physiol Mol Biol Plants       Date:  2018-07-25

7.  Light affects salt stress-induced transcriptional memory of P5CS1 in Arabidopsis.

Authors:  Xuan Jun Feng; Jing Rui Li; Shi Lian Qi; Qing Fang Lin; Jing Bo Jin; Xue Jun Hua
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-07       Impact factor: 11.205

8.  Identification and expression analyses of MYB and WRKY transcription factor genes in Papaver somniferum L.

Authors:  Tayebeh Kakeshpour; Shadi Nayebi; Sajad Rashidi Monfared; Ahmad Moieni; Ghasem Karimzadeh
Journal:  Physiol Mol Biol Plants       Date:  2015-10-13

9.  MicroRNA 339 down-regulates μ-opioid receptor at the post-transcriptional level in response to opioid treatment.

Authors:  Qifang Wu; Cheol Kyu Hwang; Hui Zheng; Yadav Wagley; Hong-Yiou Lin; Do Kyung Kim; Ping-Yee Law; Horace H Loh; Li-Na Wei
Journal:  FASEB J       Date:  2012-10-19       Impact factor: 5.191

10.  Study of QTLs linked to awn length and their relationships with chloroplasts under control and saline environments in bread wheat.

Authors:  Bahram Masoudi; Mohsen Mardi; Eslam Majidi Hervan; Mohammad Reza Bihamta; Mohammad Reza Naghavi; Babak Nakhoda; Behnam Bakhshi; Mehrzad Ahmadi; Mohammad Taghi Tabatabaei; Mohamad Hossein Dehghani Firouzabadi
Journal:  Genes Genomics       Date:  2018-10-30       Impact factor: 1.839
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