Literature DB >> 20825394

A spatial dirichlet process mixture model for clustering population genetics data.

Brian J Reich1, Howard D Bondell.   

Abstract

Identifying homogeneous groups of individuals is an important problem in population genetics. Recently, several methods have been proposed that exploit spatial information to improve clustering algorithms. In this article, we develop a Bayesian clustering algorithm based on the Dirichlet process prior that uses both genetic and spatial information to classify individuals into homogeneous clusters for further study. We study the performance of our method using a simulation study and use our model to cluster wolverines in Western Montana using microsatellite data.
© 2010, The International Biometric Society.

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Year:  2010        PMID: 20825394      PMCID: PMC3043140          DOI: 10.1111/j.1541-0420.2010.01484.x

Source DB:  PubMed          Journal:  Biometrics        ISSN: 0006-341X            Impact factor:   2.571


  13 in total

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