Literature DB >> 20818169

Plant homeodomain fingers form a helping hand for transcription.

Klaus Fortschegger1, Ramin Shiekhattar.   

Abstract

Several recent publications demonstrate a co-activator function for a subgroup of plant homeodomain fingers, which in humans comprises PHF2, PHF8 and KIAA1718. Besides an N-terminal plant homeodomain (PHD) these proteins also harbor an enzymatically active Jumonji-C domain (JmjC). While they have been shown to bind via their PHDs to H3K4me3-bearing nucleosomes at active gene promoters, their JmjC-domains are able to remove mono- and dimethyl-lysine 9 or 27 on histone H3, and monomethyl-lysine 20 on histone H4, chromatin modifications which correlate with transcriptional repression. Such dual histone crosstalk insures the proper removal of repressive histone marks following transcriptional activation by RNA polymerases I and II. Mutations in the PHF8 gene lead to X-linked mental retardation (XLMR) and knockdown of KIAA1718 and PHF8 homologs in zebrafish causes brain defects. Thus, the co-activator function of this new class of chromatin modifying enzymes has important functional roles in neuronal development. To continue with the nomenclature for histone demethylases, we propose the usage of KDM7A, -B and -C for KIAA1718, PHF8 and PHF2 proteins, respectively.

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Year:  2011        PMID: 20818169      PMCID: PMC3044459          DOI: 10.4161/epi.6.1.13297

Source DB:  PubMed          Journal:  Epigenetics        ISSN: 1559-2294            Impact factor:   4.528


  37 in total

1.  PHF8 targets histone methylation and RNA polymerase II to activate transcription.

Authors:  Klaus Fortschegger; Petra de Graaf; Nikolay S Outchkourov; Frederik M A van Schaik; H T Marc Timmers; Ramin Shiekhattar
Journal:  Mol Cell Biol       Date:  2010-04-26       Impact factor: 4.272

2.  PHF8 is a histone H3K9me2 demethylase regulating rRNA synthesis.

Authors:  Ziqi Zhu; Yanru Wang; Xia Li; Yiqin Wang; Longyong Xu; Xiang Wang; Tianliang Sun; Xiaobin Dong; Lulu Chen; Hailei Mao; Yi Yu; Jinsong Li; Jingsong Li; Pin Adele Chen; Charlie Degui Chen
Journal:  Cell Res       Date:  2010-06-08       Impact factor: 25.617

3.  Structural insights into a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans.

Authors:  Ying Yang; Lulu Hu; Ping Wang; Haifeng Hou; Yan Lin; Yi Liu; Ze Li; Rui Gong; Xiang Feng; Lu Zhou; Wen Zhang; Yuhui Dong; Huirong Yang; Hanqing Lin; Yiqin Wang; Charlie Degui Chen; Yanhui Xu
Journal:  Cell Res       Date:  2010-06-22       Impact factor: 25.617

4.  Coordinated regulation of active and repressive histone methylations by a dual-specificity histone demethylase ceKDM7A from Caenorhabditis elegans.

Authors:  Hanqing Lin; Yiqin Wang; Yanru Wang; Feng Tian; Pu Pu; Yi Yu; Hailei Mao; Ying Yang; Ping Wang; Lulu Hu; Yan Lin; Yi Liu; Yanhui Xu; Charlie Degui Chen
Journal:  Cell Res       Date:  2010-06-22       Impact factor: 25.617

5.  KDM7 is a dual demethylase for histone H3 Lys 9 and Lys 27 and functions in brain development.

Authors:  Yu-ichi Tsukada; Tohru Ishitani; Keiichi I Nakayama
Journal:  Genes Dev       Date:  2010-03-01       Impact factor: 11.361

6.  Recognition of histone H3K4 trimethylation by the plant homeodomain of PHF2 modulates histone demethylation.

Authors:  Hong Wen; Jingzhi Li; Tanjing Song; Ming Lu; Pu-Yeh Kan; Min Gyu Lee; Bingdong Sha; Xiaobing Shi
Journal:  J Biol Chem       Date:  2010-02-02       Impact factor: 5.157

7.  The X-linked mental retardation gene PHF8 is a histone demethylase involved in neuronal differentiation.

Authors:  Jihui Qiu; Guang Shi; Yuanhui Jia; Jing Li; Meng Wu; Jiwen Li; Shuo Dong; Jiemin Wong
Journal:  Cell Res       Date:  2010-06-15       Impact factor: 25.617

8.  A functional link between the histone demethylase PHF8 and the transcription factor ZNF711 in X-linked mental retardation.

Authors:  Daniela Kleine-Kohlbrecher; Jesper Christensen; Julien Vandamme; Iratxe Abarrategui; Mads Bak; Niels Tommerup; Xiaobing Shi; Or Gozani; Juri Rappsilber; Anna Elisabetta Salcini; Kristian Helin
Journal:  Mol Cell       Date:  2010-03-25       Impact factor: 17.970

9.  Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofacial development.

Authors:  Hank H Qi; Madathia Sarkissian; Gang-Qing Hu; Zhibin Wang; Arindam Bhattacharjee; D Benjamin Gordon; Michelle Gonzales; Fei Lan; Pat P Ongusaha; Maite Huarte; Nasser K Yaghi; Huijun Lim; Benjamin A Garcia; Leonardo Brizuela; Keji Zhao; Thomas M Roberts; Yang Shi
Journal:  Nature       Date:  2010-07-11       Impact factor: 49.962

10.  PHF8 mediates histone H4 lysine 20 demethylation events involved in cell cycle progression.

Authors:  Wen Liu; Bogdan Tanasa; Oksana V Tyurina; Tian Yuan Zhou; Reto Gassmann; Wei Ting Liu; Kenneth A Ohgi; Chris Benner; Ivan Garcia-Bassets; Aneel K Aggarwal; Arshad Desai; Pieter C Dorrestein; Christopher K Glass; Michael G Rosenfeld
Journal:  Nature       Date:  2010-07-11       Impact factor: 49.962

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  23 in total

1.  Plant homeodomain finger protein 2 promotes bone formation by demethylating and activating Runx2 for osteoblast differentiation.

Authors:  Hye-Jin Kim; Jong-Wan Park; Kyoung-Hwa Lee; Haejin Yoon; Dong Hoon Shin; Uk-Il Ju; Seung Hyeok Seok; Seung Hyeon Lim; Zang Hee Lee; Hong-Hee Kim; Yang-Sook Chun
Journal:  Cell Res       Date:  2014-09-26       Impact factor: 25.617

2.  PHF2 histone demethylase prevents DNA damage and genome instability by controlling cell cycle progression of neural progenitors.

Authors:  Stella Pappa; Natalia Padilla; Simona Iacobucci; Marta Vicioso; Elena Álvarez de la Campa; Claudia Navarro; Elia Marcos; Xavier de la Cruz; Marian A Martínez-Balbás
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-05       Impact factor: 11.205

3.  Histone demethylase PHF2 activates CREB and promotes memory consolidation.

Authors:  Hye-Jin Kim; Sung Won Hur; Jun Bum Park; Jieun Seo; Jae Jin Shin; Seon-Young Kim; Myoung-Hwan Kim; Do Hyun Han; Jong-Wan Park; Joo Min Park; Sang Jeong Kim; Yang-Sook Chun
Journal:  EMBO Rep       Date:  2019-07-30       Impact factor: 8.807

4.  PHF2 histone demethylase acts as a tumor suppressor in association with p53 in cancer.

Authors:  K-H Lee; J-W Park; H-S Sung; Y-J Choi; W H Kim; H S Lee; H-J Chung; H-W Shin; C-H Cho; T-Y Kim; S-H Li; H-D Youn; S J Kim; Y-S Chun
Journal:  Oncogene       Date:  2014-07-21       Impact factor: 9.867

5.  The COMPASS family of H3K4 methylases in Drosophila.

Authors:  Man Mohan; Hans-Martin Herz; Edwin R Smith; Ying Zhang; Jessica Jackson; Michael P Washburn; Laurence Florens; Joel C Eissenberg; Ali Shilatifard
Journal:  Mol Cell Biol       Date:  2011-08-29       Impact factor: 4.272

6.  Cyclin E-CDK2 protein phosphorylates plant homeodomain finger protein 8 (PHF8) and regulates its function in the cell cycle.

Authors:  Liping Sun; Yan Huang; Qian Wei; Xiaomei Tong; Rong Cai; Grzegorz Nalepa; Xin Ye
Journal:  J Biol Chem       Date:  2014-12-29       Impact factor: 5.157

7.  Epigenetic Regulation by Lysine Demethylase 5 (KDM5) Enzymes in Cancer.

Authors:  Lauren P Blair; Jian Cao; Mike Ran Zou; Joyce Sayegh; Qin Yan
Journal:  Cancers (Basel)       Date:  2011-03-01       Impact factor: 6.639

8.  PHD finger protein 2 (PHF2) represses ribosomal RNA gene transcription by antagonizing PHF finger protein 8 (PHF8) and recruiting methyltransferase SUV39H1.

Authors:  Guang Shi; Meng Wu; Lan Fang; Fang Yu; Shimeng Cheng; Jiwen Li; James X Du; Jiemin Wong
Journal:  J Biol Chem       Date:  2014-09-09       Impact factor: 5.157

9.  Histone recognition and nuclear receptor co-activator functions of Drosophila cara mitad, a homolog of the N-terminal portion of mammalian MLL2 and MLL3.

Authors:  Chhavi Chauhan; Claudia B Zraly; Megan Parilla; Manuel O Diaz; Andrew K Dingwall
Journal:  Development       Date:  2012-06       Impact factor: 6.868

10.  The histone demethylase PHF8 is essential for cytoskeleton dynamics.

Authors:  Elena Asensio-Juan; Carme Gallego; Marian A Martínez-Balbás
Journal:  Nucleic Acids Res       Date:  2012-07-31       Impact factor: 16.971

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