Literature DB >> 20802037

A novel six-rhodopsin system in a single archaeon.

Hsu-Yuan Fu1, Yu-Cheng Lin, Yung-Ning Chang, Hsiaochu Tseng, Ching-Che Huang, Kang-Cheng Liu, Ching-Shin Huang, Che-Wei Su, Rueyhung Roc Weng, Yin-Yu Lee, Wailap Victor Ng, Chii-Shen Yang.   

Abstract

Microbial rhodopsins, a diverse group of photoactive proteins found in Archaea, Bacteria, and Eukarya, function in photosensing and photoenergy harvesting and may have been present in the resource-limited early global environment. Four different physiological functions have been identified and characterized for nearly 5,000 retinal-binding photoreceptors, these being ion transporters that transport proton or chloride and sensory rhodopsins that mediate light-attractant and/or -repellent responses. The greatest number of rhodopsins previously observed in a single archaeon had been four. Here, we report a newly discovered six-rhodopsin system in a single archaeon, Haloarcula marismortui, which shows a more diverse absorbance spectral distribution than any previously known rhodopsin system, and, for the first time, two light-driven proton transporters that respond to the same wavelength. All six rhodopsins, the greatest number ever identified in a single archaeon, were first shown to be expressed in H. marismortui, and these were then overexpressed in Escherichia coli. The proteins were purified for absorption spectra and photocycle determination, followed by measurement of ion transportation and phototaxis. The results clearly indicate the existence of a proton transporter system with two isochromatic rhodopsins and a new type of sensory rhodopsin-like transducer in H. marismortui.

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Year:  2010        PMID: 20802037      PMCID: PMC2976437          DOI: 10.1128/JB.00642-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  36 in total

Review 1.  The multitalented microbial sensory rhodopsins.

Authors:  John L Spudich
Journal:  Trends Microbiol       Date:  2006-09-26       Impact factor: 17.079

2.  Evolutionary genomics reveals conserved structural determinants of signaling and adaptation in microbial chemoreceptors.

Authors:  Roger P Alexander; Igor B Zhulin
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-13       Impact factor: 11.205

Review 3.  Signal transfer in haloarchaeal sensory rhodopsin- transducer complexes.

Authors:  Jun Sasaki; John L Spudich
Journal:  Photochem Photobiol       Date:  2008-03-12       Impact factor: 3.421

Review 4.  Phototransduction and the evolution of photoreceptors.

Authors:  Gordon L Fain; Roger Hardie; Simon B Laughlin
Journal:  Curr Biol       Date:  2010-02-09       Impact factor: 10.834

Review 5.  Halobacterial rhodopsins.

Authors:  Y Mukohata; K Ihara; T Tamura; Y Sugiyama
Journal:  J Biochem       Date:  1999-04       Impact factor: 3.387

6.  Photosensory functions of channelrhodopsins in native algal cells.

Authors:  Oleg A Sineshchekov; Elena G Govorunova; John L Spudich
Journal:  Photochem Photobiol       Date:  2009-02-11       Impact factor: 3.421

7.  Purification of histidine tagged bacteriorhodopsin, pharaonis halorhodopsin and pharaonis sensory rhodopsin II functionally expressed in Escherichia coli.

Authors:  I P Hohenfeld; A A Wegener; M Engelhard
Journal:  FEBS Lett       Date:  1999-01-15       Impact factor: 4.124

8.  The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity.

Authors:  Henk Bolhuis; Peter Palm; Andy Wende; Michaela Falb; Markus Rampp; Francisco Rodriguez-Valera; Friedhelm Pfeiffer; Dieter Oesterhelt
Journal:  BMC Genomics       Date:  2006-07-04       Impact factor: 3.969

9.  SMART 6: recent updates and new developments.

Authors:  Ivica Letunic; Tobias Doerks; Peer Bork
Journal:  Nucleic Acids Res       Date:  2008-10-31       Impact factor: 16.971

Review 10.  Metabolism of halophilic archaea.

Authors:  Michaela Falb; Kerstin Müller; Lisa Königsmaier; Tanja Oberwinkler; Patrick Horn; Susanne von Gronau; Orland Gonzalez; Friedhelm Pfeiffer; Erich Bornberg-Bauer; Dieter Oesterhelt
Journal:  Extremophiles       Date:  2008-02-16       Impact factor: 2.395

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  24 in total

1.  The signal transfer from the receptor NpSRII to the transducer NpHtrII is not hampered by the D75N mutation.

Authors:  Julia Holterhues; Enrica Bordignon; Daniel Klose; Christian Rickert; Johann P Klare; Swetlana Martell; Lin Li; Martin Engelhard; Heinz-Jürgen Steinhoff
Journal:  Biophys J       Date:  2011-05-04       Impact factor: 4.033

Review 2.  Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Authors:  Jarone Pinhassi; Edward F DeLong; Oded Béjà; José M González; Carlos Pedrós-Alió
Journal:  Microbiol Mol Biol Rev       Date:  2016-09-14       Impact factor: 11.056

3.  Rational design of a colorimetric pH sensor from a soluble retinoic acid chaperone.

Authors:  Tetyana Berbasova; Meisam Nosrati; Chrysoula Vasileiou; Wenjing Wang; Kin Sing Stephen Lee; Ipek Yapici; James H Geiger; Babak Borhan
Journal:  J Am Chem Soc       Date:  2013-10-18       Impact factor: 15.419

4.  Metabolic capabilities and systems fluctuations in Haloarcula marismortui revealed by integrative genomics and proteomics analyses.

Authors:  Lichieh Julie Chu; Hanyin Yang; Peiyin Shih; Yuchieh Kao; Yihsuan Shannon Tsai; Jinzhi Chen; Gueitang Huang; Rueyhung Roc Weng; Ying Sonia Ting; Xuefeng Fang; Priska D von Haller; David R Goodlett; Wailap Victor Ng
Journal:  J Proteome Res       Date:  2011-06-14       Impact factor: 4.466

Review 5.  The photochemical determinants of color vision: revealing how opsins tune their chromophore's absorption wavelength.

Authors:  Wenjing Wang; James H Geiger; Babak Borhan
Journal:  Bioessays       Date:  2013-10-24       Impact factor: 4.345

6.  OMICS in ecology: systems level analyses of Halobacterium salinarum reveal large-scale temperature-mediated changes and a requirement of CctA for thermotolerance.

Authors:  Rueyhung Roc Weng; Hung-Wei Shu; See-Wen Chin; Yuchieh Kao; Ting-Wen Chen; Chen-Chung Liao; Yeou-Guang Tsay; Wailap Victor Ng
Journal:  OMICS       Date:  2013-10-22

7.  Ser(262) determines the chloride-dependent colour tuning of a new halorhodopsin from Haloquadratum walsbyi.

Authors:  Hsu-Yuan Fu; Yung-Ning Chang; Ming-Jin Jheng; Chii-Shen Yang
Journal:  Biosci Rep       Date:  2012-10       Impact factor: 3.840

8.  Sequencing of seven haloarchaeal genomes reveals patterns of genomic flux.

Authors:  Erin A Lynch; Morgan G I Langille; Aaron Darling; Elizabeth G Wilbanks; Caitlin Haltiner; Katie S Y Shao; Michael O Starr; Clotilde Teiling; Timothy T Harkins; Robert A Edwards; Jonathan A Eisen; Marc T Facciotti
Journal:  PLoS One       Date:  2012-07-24       Impact factor: 3.240

9.  Using Haloarcula marismortui bacteriorhodopsin as a fusion tag for enhancing and visible expression of integral membrane proteins in Escherichia coli.

Authors:  Min-Feng Hsu; Tsung-Fu Yu; Chia-Cheng Chou; Hsu-Yuan Fu; Chii-Shen Yang; Andrew H J Wang
Journal:  PLoS One       Date:  2013-02-15       Impact factor: 3.240

10.  Genomics and physiology of a marine flavobacterium encoding a proteorhodopsin and a xanthorhodopsin-like protein.

Authors:  Thomas Riedel; Laura Gómez-Consarnau; Jürgen Tomasch; Madeleine Martin; Michael Jarek; José M González; Stefan Spring; Meike Rohlfs; Thorsten Brinkhoff; Heribert Cypionka; Markus Göker; Anne Fiebig; Johannes Klein; Alexander Goesmann; Jed A Fuhrman; Irene Wagner-Döbler
Journal:  PLoS One       Date:  2013-03-04       Impact factor: 3.240

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