Literature DB >> 20800303

Potential of Arabidopsis systems biology to advance the biofuel field.

Ruben Vanholme1, Rebecca Van Acker, Wout Boerjan.   

Abstract

Plant biomass is a renewable and potentially sustainable resource for the production of liquid biofuels and a multitude of bio-based materials. To tailor plants for biofuel production, a powerful gene discovery program targeted to cell wall recalcitrance genes is needed. In parallel, a system is required that reveals the pleiotropic effects of gene modifications and that delivers the fundamental knowledge necessary for successful gene stacking. In our opinion, these objectives can be pioneered through a systems biology approach in Arabidopsis. We develop our ideas with a focus on the lignin biosynthetic pathway, because lignin is among the most important factors determining cell wall recalcitrance.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20800303     DOI: 10.1016/j.tibtech.2010.07.008

Source DB:  PubMed          Journal:  Trends Biotechnol        ISSN: 0167-7799            Impact factor:   19.536


  12 in total

1.  The protein expression landscape of the Arabidopsis root.

Authors:  Jalean J Petricka; Monica A Schauer; Molly Megraw; Natalie W Breakfield; J Will Thompson; Stoyan Georgiev; Erik J Soderblom; Uwe Ohler; Martin Arthur Moseley; Ueli Grossniklaus; Philip N Benfey
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-23       Impact factor: 11.205

2.  Cloning and functional characterization of MusaVND1 using transgenic banana plants.

Authors:  Sanjana Negi; Himanshu Tak; T R Ganapathi
Journal:  Transgenic Res       Date:  2014-12-19       Impact factor: 2.788

3.  Lignification in sugarcane: biochemical characterization, gene discovery, and expression analysis in two genotypes contrasting for lignin content.

Authors:  Alexandra Bottcher; Igor Cesarino; Adriana Brombini dos Santos; Renato Vicentini; Juliana Lischka Sampaio Mayer; Ruben Vanholme; Kris Morreel; Geert Goeminne; Jullyana Cristina Magalhães Silva Moura; Paula Macedo Nobile; Sandra Maria Carmello-Guerreiro; Ivan Antonio dos Anjos; Silvana Creste; Wout Boerjan; Marcos Guimarães de Andrade Landell; Paulo Mazzafera
Journal:  Plant Physiol       Date:  2013-10-21       Impact factor: 8.340

4.  Suppression of CCR impacts metabolite profile and cell wall composition in Pinus radiata tracheary elements.

Authors:  Armin Wagner; Yuki Tobimatsu; Geert Goeminne; Lorelle Phillips; Heather Flint; Diane Steward; Kirk Torr; Lloyd Donaldson; Wout Boerjan; John Ralph
Journal:  Plant Mol Biol       Date:  2012-11-07       Impact factor: 4.076

5.  A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis.

Authors:  Ruben Vanholme; Véronique Storme; Bartel Vanholme; Lisa Sundin; Jørgen Holst Christensen; Geert Goeminne; Claire Halpin; Antje Rohde; Kris Morreel; Wout Boerjan
Journal:  Plant Cell       Date:  2012-09-25       Impact factor: 11.277

6.  Range of cell-wall alterations enhance saccharification in Brachypodium distachyon mutants.

Authors:  Poppy E Marriott; Richard Sibout; Catherine Lapierre; Jonatan U Fangel; William G T Willats; Herman Hofte; Leonardo D Gómez; Simon J McQueen-Mason
Journal:  Proc Natl Acad Sci U S A       Date:  2014-09-22       Impact factor: 11.205

7.  Towards a carbon-negative sustainable bio-based economy.

Authors:  Bartel Vanholme; Tom Desmet; Frederik Ronsse; Korneel Rabaey; Frank Van Breusegem; Marjan De Mey; Wim Soetaert; Wout Boerjan
Journal:  Front Plant Sci       Date:  2013-06-03       Impact factor: 5.753

8.  Lignin biosynthesis perturbations affect secondary cell wall composition and saccharification yield in Arabidopsis thaliana.

Authors:  Rebecca Van Acker; Ruben Vanholme; Véronique Storme; Jennifer C Mortimer; Paul Dupree; Wout Boerjan
Journal:  Biotechnol Biofuels       Date:  2013-04-26       Impact factor: 6.040

9.  Epigallocatechin gallate incorporation into lignin enhances the alkaline delignification and enzymatic saccharification of cell walls.

Authors:  Sasikumar Elumalai; Yuki Tobimatsu; John H Grabber; Xuejun Pan; John Ralph
Journal:  Biotechnol Biofuels       Date:  2012-08-13       Impact factor: 6.040

10.  Forward genetic screening for the improved production of fermentable sugars from plant biomass.

Authors:  George Stamatiou; Danielle P Vidaurre; Isaac Shim; Xurong Tang; Wolfgang Moeder; Dario Bonetta; Peter McCourt
Journal:  PLoS One       Date:  2013-01-31       Impact factor: 3.240

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