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Literature DB >> 20800106

vSPARQL: a view definition language for the semantic web.

Marianne Shaw¹, Landon T Detwiler, Natalya Noy, James Brinkley, Dan Suciu.

Abstract

Translational medicine applications would like to leverage the biological and biomedical ontologies, vocabularies, and data sets available on the semantic web. We present a general solution for RDF information set reuse inspired by database views. Our view definition language, vSPARQL, allows applications to specify the exact content that they are interested in and how that content should be restructured or modified. Applications can access relevant content by querying against these view definitions. We evaluate the expressivity of our approach by defining views for practical use cases and comparing our view definition language to existing query languages.

Entities: Chemical Disease Gene Species

Mesh：

Year: 2010 PMID： 20800106 PMCID： PMC3042057 DOI： 10.1016/j.jbi.2010.08.008

Source DB: PubMed Journal: J Biomed Inform ISSN： 1532-0464 Impact factor: 6.317

7 in total

1. A reference ontology for biomedical informatics: the Foundational Model of Anatomy.

Authors: Cornelius Rosse; José L V Mejino
Journal: J Biomed Inform Date: 2003-12 Impact factor: 6.317

2. A framework for using reference ontologies as a foundation for the semantic web.

Authors: James F Brinkley; Dan Suciu; Landon T Detwiler; John H Gennari; Cornelius Rosse
Journal: AMIA Annu Symp Proc Date: 2006

3. Translating the Foundational Model of Anatomy into OWL.

Authors: Natalya F Noy; Daniel L Rubin
Journal: Web Semant Date: 2008 Impact factor: 1.897

4. Generating application ontologies from reference ontologies.

Authors: Marianne Shaw; Landon T Detwiler; James F Brinkley; Dan Suciu
Journal: AMIA Annu Symp Proc Date: 2008-11-06

5. Bridging biological ontologies and biosimulation: the ontology of physics for biology.

Authors: Daniel L Cook; Jose L V Mejino; Maxwell L Neal; John H Gennari
Journal: AMIA Annu Symp Proc Date: 2008-11-06

6. Regular paths in SparQL: querying the NCI Thesaurus.

Authors: Landon T Detwiler; Dan Suciu; James F Brinkley
Journal: AMIA Annu Symp Proc Date: 2008-11-06

7. Composite annotations: requirements for mapping multiscale data and models to biomedical ontologies.

Authors: Daniel L Cook; Jose L V Mejino; Maxwell L Neal; John H Gennari
Journal: Conf Proc IEEE Eng Med Biol Soc Date: 2009

7 in total

6 in total

1. NeuroLOG: sharing neuroimaging data using an ontology-based federated approach.

Authors: Bernard Gibaud; Gilles Kassel; Michel Dojat; Bénédicte Batrancourt; Franck Michel; Alban Gaignard; Johan Montagnat
Journal: AMIA Annu Symp Proc Date: 2011-10-22

2. A query integrator and manager for the query web.

Authors: James F Brinkley; Landon T Detwiler
Journal: J Biomed Inform Date: 2012-04-17 Impact factor: 6.317

3. Ontologies for clinical and translational research: Introduction.

Authors: Barry Smith; Richard H Scheuermann
Journal: J Biomed Inform Date: 2011-01-15 Impact factor: 6.317

4. OntoVIP: an ontology for the annotation of object models used for medical image simulation.

Authors: Bernard Gibaud; Germain Forestier; Hugues Benoit-Cattin; Frédéric Cervenansky; Patrick Clarysse; Denis Friboulet; Alban Gaignard; Patrick Hugonnard; Carole Lartizien; Hervé Liebgott; Johan Montagnat; Joachim Tabary; Tristan Glatard
Journal: J Biomed Inform Date: 2014-07-16 Impact factor: 6.317

5. Ontological labels for automated location of anatomical shape differences.

Authors: Shane Steinert-Threlkeld; Siamak Ardekani; Jose L V Mejino; Landon Todd Detwiler; James F Brinkley; Michael Halle; Ron Kikinis; Raimond L Winslow; Michael I Miller; J Tilak Ratnanather
Journal: J Biomed Inform Date: 2012-04-03 Impact factor: 6.317

6. Ontology-based approach for in vivo human connectomics: the medial Brodmann area 6 case study.

Authors: Tristan Moreau; Bernard Gibaud
Journal: Front Neuroinform Date: 2015-04-10 Impact factor: 4.081

6 in total