Literature DB >> 18999137

Regular paths in SparQL: querying the NCI Thesaurus.

Landon T Detwiler1, Dan Suciu, James F Brinkley.   

Abstract

OWL, the Web Ontology Language, provides syntax and semantics for representing knowledge for the semantic web. Many of the constructs of OWL have a basis in the field of description logics. While the formal underpinnings of description logics have lead to a highly computable language, it has come at a cognitive cost. OWL ontologies are often unintuitive to readers lacking a strong logic background. In this work we describe GLEEN, a regular path expression library, which extends the RDF query language SparQL to support complex path expressions over OWL and other RDF-based ontologies. We illustrate the utility of GLEEN by showing how it can be used in a query-based approach to defining simpler, more intuitive views of OWL ontologies. In particular we show how relatively simple GLEEN-enhanced SparQL queries can create views of the OWL version of the NCI Thesaurus that match the views generated by the web-based NCI browser.

Mesh:

Year:  2008        PMID: 18999137      PMCID: PMC2656016     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  1 in total

1.  A framework for using reference ontologies as a foundation for the semantic web.

Authors:  James F Brinkley; Dan Suciu; Landon T Detwiler; John H Gennari; Cornelius Rosse
Journal:  AMIA Annu Symp Proc       Date:  2006
  1 in total
  7 in total

1.  Supporting retrieval of diverse biomedical data using evidence-aware queries.

Authors:  Eithon Cadag; Peter Tarczy-Hornoch
Journal:  J Biomed Inform       Date:  2010-07-17       Impact factor: 6.317

2.  Generating application ontologies from reference ontologies.

Authors:  Marianne Shaw; Landon T Detwiler; James F Brinkley; Dan Suciu
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

3.  OntoVIP: an ontology for the annotation of object models used for medical image simulation.

Authors:  Bernard Gibaud; Germain Forestier; Hugues Benoit-Cattin; Frédéric Cervenansky; Patrick Clarysse; Denis Friboulet; Alban Gaignard; Patrick Hugonnard; Carole Lartizien; Hervé Liebgott; Johan Montagnat; Joachim Tabary; Tristan Glatard
Journal:  J Biomed Inform       Date:  2014-07-16       Impact factor: 6.317

4.  vSPARQL: a view definition language for the semantic web.

Authors:  Marianne Shaw; Landon T Detwiler; Natalya Noy; James Brinkley; Dan Suciu
Journal:  J Biomed Inform       Date:  2010-08-25       Impact factor: 6.317

5.  Content-specific auditing of a large scale anatomy ontology.

Authors:  Ira J Kalet; Jose L V Mejino; Vania Wang; Mark Whipple; James F Brinkley
Journal:  J Biomed Inform       Date:  2009-02-25       Impact factor: 6.317

6.  Distributed XQuery-Based Integration and Visualization of Multimodality Brain Mapping Data.

Authors:  Landon T Detwiler; Dan Suciu; Joshua D Franklin; Eider B Moore; Andrew V Poliakov; Eunjung S Lee; David P Corina; George A Ojemann; James F Brinkley
Journal:  Front Neuroinform       Date:  2009-01-30       Impact factor: 4.081

7.  Predicate Oriented Pattern Analysis for Biomedical Knowledge Discovery.

Authors:  Feichen Shen; Hongfang Liu; Sunghwan Sohn; David W Larson; Yugyung Lee
Journal:  Intell Inf Manag       Date:  2016-05
  7 in total

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