Literature DB >> 20797691

A focal epilepsy and intellectual disability syndrome is due to a mutation in TBC1D24.

Mark A Corbett1, Melanie Bahlo, Lachlan Jolly, Zaid Afawi, Alison E Gardner, Karen L Oliver, Stanley Tan, Amy Coffey, John C Mulley, Leanne M Dibbens, Walid Simri, Adel Shalata, Sara Kivity, Graeme D Jackson, Samuel F Berkovic, Jozef Gecz.   

Abstract

We characterized an autosomal-recessive syndrome of focal epilepsy, dysarthria, and mild to moderate intellectual disability in a consanguineous Arab-Israeli family associated with subtle cortical thickening. We used multipoint linkage analysis to map the causative mutation to a 3.2 Mb interval within 16p13.3 with a LOD score of 3.86. The linked interval contained 160 genes, many of which were considered to be plausible candidates to harbor the disease-causing mutation. To interrogate the interval in an efficient and unbiased manner, we used targeted sequence enrichment and massively parallel sequencing. By prioritizing unique variants that affected protein translation, a pathogenic mutation was identified in TBC1D24 (p.F251L), a gene of unknown function. It is a member of a large gene family encoding TBC domain proteins with predicted function as Rab GTPase activators. We show that TBC1D24 is expressed early in mouse brain and that TBC1D24 protein is a potent modulator of primary axonal arborization and specification in neuronal cells, consistent with the phenotypic abnormality described. 2010 The American Society of Human Genetics. Published by Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20797691      PMCID: PMC2933342          DOI: 10.1016/j.ajhg.2010.08.001

Source DB:  PubMed          Journal:  Am J Hum Genet        ISSN: 0002-9297            Impact factor:   11.025


  20 in total

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2.  Handling marker-marker linkage disequilibrium: pedigree analysis with clustered markers.

Authors:  Gonçalo R Abecasis; Janis E Wigginton
Journal:  Am J Hum Genet       Date:  2005-09-20       Impact factor: 11.025

3.  TBC-domain GAPs for Rab GTPases accelerate GTP hydrolysis by a dual-finger mechanism.

Authors:  Xiaojing Pan; Sudharshan Eathiraj; Mary Munson; David G Lambright
Journal:  Nature       Date:  2006-07-20       Impact factor: 49.962

4.  Exploration, normalization, and genotype calls of high-density oligonucleotide SNP array data.

Authors:  Benilton Carvalho; Henrik Bengtsson; Terence P Speed; Rafael A Irizarry
Journal:  Biostatistics       Date:  2006-12-22       Impact factor: 5.899

5.  Culturing hippocampal neurons.

Authors:  Stefanie Kaech; Gary Banker
Journal:  Nat Protoc       Date:  2007-01-11       Impact factor: 13.491

6.  Direct selection of human genomic loci by microarray hybridization.

Authors:  Thomas J Albert; Michael N Molla; Donna M Muzny; Lynne Nazareth; David Wheeler; Xingzhi Song; Todd A Richmond; Chris M Middle; Matthew J Rodesch; Charles J Packard; George M Weinstock; Richard A Gibbs
Journal:  Nat Methods       Date:  2007-10-14       Impact factor: 28.547

7.  Generating linkage mapping files from Affymetrix SNP chip data.

Authors:  M Bahlo; C J Bromhead
Journal:  Bioinformatics       Date:  2009-05-12       Impact factor: 6.937

8.  Oligophrenin-1 encodes a rhoGAP protein involved in X-linked mental retardation.

Authors:  P Billuart; T Bienvenu; N Ronce; V des Portes; M C Vinet; R Zemni; H Roest Crollius; A Carrié; F Fauchereau; M Cherry; S Briault; B Hamel; J P Fryns; C Beldjord; A Kahn; C Moraine; J Chelly
Journal:  Nature       Date:  1998-04-30       Impact factor: 49.962

9.  A population-based study on epilepsy in mentally retarded children.

Authors:  E M Airaksinen; R Matilainen; T Mononen; K Mustonen; J Partanen; V Jokela; P Halonen
Journal:  Epilepsia       Date:  2000-09       Impact factor: 5.864

10.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.

Authors:  J D Thompson; D G Higgins; T J Gibson
Journal:  Nucleic Acids Res       Date:  1994-11-11       Impact factor: 16.971

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  55 in total

Review 1.  Illuminating the functional and structural repertoire of human TBC/RABGAPs.

Authors:  Marieke A M Frasa; Katja T Koessmeier; M Reza Ahmadian; Vania M M Braga
Journal:  Nat Rev Mol Cell Biol       Date:  2012-01-18       Impact factor: 94.444

2.  Clinical Genetic Testing in Epilepsy.

Authors:  Heather C Mefford
Journal:  Epilepsy Curr       Date:  2015 Jul-Aug       Impact factor: 7.500

3.  Silencing of TBC1D15 promotes RhoA activation and membrane blebbing.

Authors:  Yuko Takahara; Masao Maeda; Hitoki Hasegawa; Satoko Ito; Toshinori Hyodo; Eri Asano; Masahide Takahashi; Michinari Hamaguchi; Takeshi Senga
Journal:  Mol Cell Biochem       Date:  2013-12-14       Impact factor: 3.396

Review 4.  Neuronal lysosomes.

Authors:  Shawn M Ferguson
Journal:  Neurosci Lett       Date:  2018-04-04       Impact factor: 3.046

Review 5.  Epilepsy genetics--past, present, and future.

Authors:  Annapurna Poduri; Daniel Lowenstein
Journal:  Curr Opin Genet Dev       Date:  2011-01-27       Impact factor: 5.578

6.  Advances in epilepsy genetics and genomics.

Authors:  Jennifer A Kearney
Journal:  Epilepsy Curr       Date:  2012-07       Impact factor: 7.500

7.  The phenotypic landscape of a Tbc1d24 mutant mouse includes convulsive seizures resembling human early infantile epileptic encephalopathy.

Authors:  Risa Tona; Wenqian Chen; Yoko Nakano; Laura D Reyes; Ronald S Petralia; Ya-Xian Wang; Matthew F Starost; Talah T Wafa; Robert J Morell; Kevin D Cravedi; Johann du Hoffmann; Takushi Miyoshi; Jeeva P Munasinghe; Tracy S Fitzgerald; Yogita Chudasama; Koichi Omori; Carlo Pierpaoli; Botond Banfi; Lijin Dong; Inna A Belyantseva; Thomas B Friedman
Journal:  Hum Mol Genet       Date:  2019-05-01       Impact factor: 6.150

8.  Skywalker-TBC1D24 has a lipid-binding pocket mutated in epilepsy and required for synaptic function.

Authors:  Baptiste Fischer; Kevin Lüthy; Jone Paesmans; Charlotte De Koninck; Ine Maes; Jef Swerts; Sabine Kuenen; Valerie Uytterhoeven; Patrik Verstreken; Wim Versées
Journal:  Nat Struct Mol Biol       Date:  2016-09-26       Impact factor: 15.369

9.  TBC1D24 regulates neuronal migration and maturation through modulation of the ARF6-dependent pathway.

Authors:  Antonio Falace; Emmanuelle Buhler; Manuela Fadda; Françoise Watrin; Pellegrino Lippiello; Emilie Pallesi-Pocachard; Pietro Baldelli; Fabio Benfenati; Federico Zara; Alfonso Represa; Anna Fassio; Carlos Cardoso
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-27       Impact factor: 11.205

Review 10.  Invited review: Small GTPases and their GAPs.

Authors:  Ashwini K Mishra; David G Lambright
Journal:  Biopolymers       Date:  2016-08       Impact factor: 2.505

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