Literature DB >> 20795686

Tautomerism in cytosine and uracil: a theoretical and experimental X-ray absorption and resonant auger study.

Vitaliy Feyer1, Oksana Plekan, Robert Richter, Marcello Coreno, Monica de Simone, Kevin C Prince, Alexander B Trofimov, Irina L Zaytseva, Jochen Schirmer.   

Abstract

The core level photoabsorption spectra of the nucleobases cytosine and uracil in the gas phase have been measured and the results interpreted with theoretical calculations using an ab initio Green’s function approach. A single tautomer of uracil is populated, in agreement with previous work, while three tautomers of cytosine are clearly identified, whose identity and relative populations at the temperature of the experiment were reported previously. The second-order ADC approach to polarization propagator was employed in calculations of X-ray photoabsorption energies and intensities. The theoretical spectra have been constructed as Boltzmann-factor-weighted sums of individual tautomer spectra. These theoretical spectra are in good agreement with the experimental photoabsorption results at the oxygen, nitrogen, and carbon edges. In addition we report resonant Auger spectra of the valence band of cytosine, which support previous assignments of the character of the valence band states.

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Year:  2010        PMID: 20795686     DOI: 10.1021/jp105062c

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  3 in total

1.  TURBOMOLE: Modular program suite for ab initio quantum-chemical and condensed-matter simulations.

Authors:  Sree Ganesh Balasubramani; Guo P Chen; Sonia Coriani; Michael Diedenhofen; Marius S Frank; Yannick J Franzke; Filipp Furche; Robin Grotjahn; Michael E Harding; Christof Hättig; Arnim Hellweg; Benjamin Helmich-Paris; Christof Holzer; Uwe Huniar; Martin Kaupp; Alireza Marefat Khah; Sarah Karbalaei Khani; Thomas Müller; Fabian Mack; Brian D Nguyen; Shane M Parker; Eva Perlt; Dmitrij Rappoport; Kevin Reiter; Saswata Roy; Matthias Rückert; Gunnar Schmitz; Marek Sierka; Enrico Tapavicza; David P Tew; Christoph van Wüllen; Vamsee K Voora; Florian Weigend; Artur Wodyński; Jason M Yu
Journal:  J Chem Phys       Date:  2020-05-14       Impact factor: 3.488

2.  An assessment of different electronic structure approaches for modeling time-resolved x-ray absorption spectroscopy.

Authors:  Shota Tsuru; Marta L Vidal; Mátyás Pápai; Anna I Krylov; Klaus B Møller; Sonia Coriani
Journal:  Struct Dyn       Date:  2021-03-12       Impact factor: 2.920

3.  XABOOM: An X-ray Absorption Benchmark of Organic Molecules Based on Carbon, Nitrogen, and Oxygen 1s → π* Transitions.

Authors:  Thomas Fransson; Iulia E Brumboiu; Marta L Vidal; Patrick Norman; Sonia Coriani; Andreas Dreuw
Journal:  J Chem Theory Comput       Date:  2021-02-05       Impact factor: 6.006

  3 in total

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