Literature DB >> 20736339

Circoletto: visualizing sequence similarity with Circos.

Nikos Darzentas1.   

Abstract

SUMMARY: We present Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results.
AVAILABILITY AND IMPLEMENTATION: Online version and downloadable software package for offline use (source code in PERL) freely available at http://bat.ina.certh.gr/tools/circoletto/ CONTACT: ndarz@certh.gr

Mesh:

Year:  2010        PMID: 20736339     DOI: 10.1093/bioinformatics/btq484

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  114 in total

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Authors:  Timothy R Fallon; Sarah E Lower; Ching-Ho Chang; Manabu Bessho-Uehara; Gavin J Martin; Adam J Bewick; Megan Behringer; Humberto J Debat; Isaac Wong; John C Day; Anton Suvorov; Christian J Silva; Kathrin F Stanger-Hall; David W Hall; Robert J Schmitz; David R Nelson; Sara M Lewis; Shuji Shigenobu; Seth M Bybee; Amanda M Larracuente; Yuichi Oba; Jing-Ke Weng
Journal:  Elife       Date:  2018-10-16       Impact factor: 8.140

3.  Origin and evolution of group XI secretory phospholipase A2 from flax (Linum usitatissimum) based on phylogenetic analysis of conserved domains.

Authors:  Payal Gupta; Raman Saini; Prasanta K Dash
Journal:  3 Biotech       Date:  2017-07-01       Impact factor: 2.406

4.  Mild Telomere Dysfunction as a Force for Altering the Adaptive Potential of Subtelomeric Genes.

Authors:  Jennifer M O Mason; Michael J McEachern
Journal:  Genetics       Date:  2017-12-14       Impact factor: 4.562

5.  A high-quality carrot genome assembly provides new insights into carotenoid accumulation and asterid genome evolution.

Authors:  Massimo Iorizzo; Shelby Ellison; Douglas Senalik; Peng Zeng; Pimchanok Satapoomin; Jiaying Huang; Megan Bowman; Marina Iovene; Walter Sanseverino; Pablo Cavagnaro; Mehtap Yildiz; Alicja Macko-Podgórni; Emilia Moranska; Ewa Grzebelus; Dariusz Grzebelus; Hamid Ashrafi; Zhijun Zheng; Shifeng Cheng; David Spooner; Allen Van Deynze; Philipp Simon
Journal:  Nat Genet       Date:  2016-05-09       Impact factor: 38.330

6.  Kinetochores attached to microtubule-ends are stabilised by Astrin bound PP1 to ensure proper chromosome segregation.

Authors:  Parveen Gul; Asifa Islam; Duccio Conti; José M Martín-Durán; Richard W Pickersgill; Viji M Draviam
Journal:  Elife       Date:  2019-12-06       Impact factor: 8.140

7.  Genome Analysis of the Fruiting Body-Forming Myxobacterium Chondromyces crocatus Reveals High Potential for Natural Product Biosynthesis.

Authors:  Nestor Zaburannyi; Boyke Bunk; Josef Maier; Jörg Overmann; Rolf Müller
Journal:  Appl Environ Microbiol       Date:  2016-01-15       Impact factor: 4.792

8.  Chloroplast genome of an extremely endangered conifer Thuja sutchuenensis Franch.: gene organization, comparative and phylogenetic analysis.

Authors:  Tao Yu; Bing-Hong Huang; Yuyang Zhang; Pei-Chun Liao; Jun-Qing Li
Journal:  Physiol Mol Biol Plants       Date:  2020-01-01

9.  Genomic Sequencing of High-Efficiency Transducing Streptococcal Bacteriophage A25: Consequences of Escape from Lysogeny.

Authors:  Kimberly McCullor; Brandon Postoak; Maliha Rahman; Catherine King; W Michael McShan
Journal:  J Bacteriol       Date:  2018-11-06       Impact factor: 3.490

10.  Novel highly thermostable endolysin from Thermus scotoductus MAT2119 bacteriophage Ph2119 with amino acid sequence similarity to eukaryotic peptidoglycan recognition proteins.

Authors:  Magdalena Plotka; Anna-Karina Kaczorowska; Aleksandra Stefanska; Agnieszka Morzywolek; Olafur H Fridjonsson; Stanislaw Dunin-Horkawicz; Lukasz Kozlowski; Gudmundur O Hreggvidsson; Jakob K Kristjansson; Slawomir Dabrowski; Janusz M Bujnicki; Tadeusz Kaczorowski
Journal:  Appl Environ Microbiol       Date:  2013-11-22       Impact factor: 4.792

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