Warning: Undefined array key "mm" in /www/wwwroot/www.ai-bt.com/si.php on line 10 Deprecated: trim(): Passing null to parameter #1 ($string) of type string is deprecated in /www/wwwroot/www.ai-bt.com/si.php on line 10 New cis-regulatory elements in the Rht-D1b locus region of wheat.

Literature DB >> 22592657

New cis-regulatory elements in the Rht-D1b locus region of wheat.

Jialei Duan¹, Jiajie Wu, Yue Liu, Jianhui Xiao, Guangyao Zhao, Yongqiang Gu, Jizeng Jia, Xiuying Kong.

Abstract

Fifteen gene-containing BACs with accumulated length of 1.82-Mb from the Rht-D1b locus region were sequenced and compared in detail with the orthologous regions of rice, sorghum, and maize. Our results show that Rht-D1b represents a conserved genomic region as implied by high gene sequence identity, good maintenance of gene colinearity, and the presence of multiple conserved noncoding sequences (CNSs) that are shared by other grass species. Eight cis-regulatory elements in these CNSs around grass DELLA genes were detected.

Entities: Gene Species

Mesh：

Substances：

Year: 2012 PMID： 22592657 DOI： 10.1007/s10142-012-0283-2

Source DB: PubMed Journal: Funct Integr Genomics ISSN： 1438-793X Impact factor: 3.410

46 in total

1. slender rice, a constitutive gibberellin response mutant, is caused by a null mutation of the SLR1 gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8.

Authors: A Ikeda; M Ueguchi-Tanaka; Y Sonoda; H Kitano; M Koshioka; Y Futsuhara; M Matsuoka; J Yamaguchi
Journal: Plant Cell Date: 2001-05 Impact factor: 11.277

2. Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat.

Authors: Xiu-Ying Kong; Yong Qiang Gu; Frank M You; Jorge Dubcovsky; Olin D Anderson
Journal: Plant Mol Biol Date: 2004-01 Impact factor: 4.076

3. Direct targeting and rapid isolation of BAC clones spanning a defined chromosome region.

Authors: Edwige Isidore; Beatrice Scherrer; Arnaud Bellec; Karine Budin; Patricia Faivre-Rampant; Robbie Waugh; Beat Keller; Michel Caboche; Catherine Feuillet; Boulos Chalhoub
Journal: Funct Integr Genomics Date: 2005-01-22 Impact factor: 3.410

4. Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize.

Authors: Silvio Salvi; Giorgio Sponza; Michele Morgante; Dwight Tomes; Xiaomu Niu; Kevin A Fengler; Robert Meeley; Evgueni V Ananiev; Sergei Svitashev; Edward Bruggemann; Bailin Li; Christine F Hainey; Slobodanka Radovic; Giusi Zaina; J-Antoni Rafalski; Scott V Tingey; Guo-Hua Miao; Ronald L Phillips; Roberto Tuberosa
Journal: Proc Natl Acad Sci U S A Date: 2007-06-26 Impact factor: 11.205

Review 5. Conserved noncoding sequences (CNSs) in higher plants.

Authors: Michael Freeling; Shabarinath Subramaniam
Journal: Curr Opin Plant Biol Date: 2009-02-25 Impact factor: 7.834

6. The gibberellin signaling pathway is regulated by the appearance and disappearance of SLENDER RICE1 in nuclei.

Authors: Hironori Itoh; Miyako Ueguchi-Tanaka; Yutaka Sato; Motoyuki Ashikari; Makoto Matsuoka
Journal: Plant Cell Date: 2002-01 Impact factor: 11.277

7. Common structural features of MAPEG -- a widespread superfamily of membrane associated proteins with highly divergent functions in eicosanoid and glutathione metabolism.

Authors: P J Jakobsson; R Morgenstern; J Mancini; A Ford-Hutchinson; B Persson
Journal: Protein Sci Date: 1999-03 Impact factor: 6.725

8. Utility and distribution of conserved noncoding sequences in the grasses.

Authors: Nicholas J Kaplinsky; David M Braun; Jon Penterman; Stephen A Goff; Michael Freeling
Journal: Proc Natl Acad Sci U S A Date: 2002-04-23 Impact factor: 11.205

9. Construction and analysis of a BAC library in the grass Brachypodium sylvaticum: its use as a tool to bridge the gap between rice and wheat in elucidating gene content.

Authors: Tracie N Foote; Simon Griffiths; Sebastien Allouis; Graham Moore
Journal: Funct Integr Genomics Date: 2004-01-16 Impact factor: 3.410

New cis-regulatory elements in the Rht-D1b locus region of wheat.

1. slender rice, a constitutive gibberellin response mutant, is caused by a null mutation of the SLR1 gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8.

2. Dynamics of the evolution of orthologous and paralogous portions of a complex locus region in two genomes of allopolyploid wheat.

3. Direct targeting and rapid isolation of BAC clones spanning a defined chromosome region.

4. Conserved noncoding genomic sequences associated with a flowering-time quantitative trait locus in maize.

Review 5. Conserved noncoding sequences (CNSs) in higher plants.

6. The gibberellin signaling pathway is regulated by the appearance and disappearance of SLENDER RICE1 in nuclei.

7. Common structural features of MAPEG -- a widespread superfamily of membrane associated proteins with highly divergent functions in eicosanoid and glutathione metabolism.

8. Utility and distribution of conserved noncoding sequences in the grasses.

9. Construction and analysis of a BAC library in the grass Brachypodium sylvaticum: its use as a tool to bridge the gap between rice and wheat in elucidating gene content.

10. Step-by-step acquisition of the gibberellin-DELLA growth-regulatory mechanism during land-plant evolution.

1. Genetic characterization and mapping of the Rht-1 homoeologs and flanking sequences in wheat.

2. Haplotype dictionary for the Rht-1 loci in wheat.

3. Rht-1 and Ppd-D1 associations with height, GA sensitivity, and days to heading in a worldwide bread wheat collection.

4. Characterization of a common wheat (Triticum aestivum L.) high-tillering dwarf mutant.

5. Mapping causal mutations by exome sequencing in a wheat TILLING population: a tall mutant case study.

6. Sequence-based mapping of the polyploid wheat genome.

7. Dynamic evolution of rht-1 homologous regions in grass genomes.