Literature DB >> 20733990

Lipid-mediated interactions tune the association of glycophorin A helix and its disruptive mutants in membranes.

Durba Sengupta1, Siewert J Marrink.   

Abstract

The specific and non-specific driving forces of helix association within membranes are still poorly understood. Here, we use coarse-grain molecular dynamics simulations to study the association behavior of glycophorin A and two disruptive mutants, T87F and a triple mutant of the GxxxG motif (G79LG83LG86L), embedded in a lipid membrane. Self-assembly simulations and the association free-energy profile confirm an energetically-favorable dimerized state for both the wild type and the mutants. The reduced association of the mutants compared to the wild type, as observed in experiments, can be justified from comparisons of the free energy profiles. Less-favorable protein-protein interactions as well as disruption of lipid packing around the mutant dimers is responsible for their reduced association. The role of the non-specific "lipid-phobic" contribution appears to be as important as the specific "helix-helix" contribution. However, the differences between the wild type and mutants are subtle and our simulations predict a dimerization state not only for the wild-type glycophorin A, but also for these 'disruptive' mutants. Our results highlight the importance of both specific as well as non-specific driving forces in the association of transmembrane helices, and point to the need of more careful interpretation of experimental measurements.

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Year:  2010        PMID: 20733990     DOI: 10.1039/c0cp00101e

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  44 in total

1.  GxxxG motifs, phenylalanine, and cholesterol guide the self-association of transmembrane domains of ErbB2 receptors.

Authors:  Anupam Prakash; Lorant Janosi; Manolis Doxastakis
Journal:  Biophys J       Date:  2011-10-19       Impact factor: 4.033

2.  Release of content through mechano-sensitive gates in pressurized liposomes.

Authors:  Martti Louhivuori; H Jelger Risselada; Erik van der Giessen; Siewert J Marrink
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-01       Impact factor: 11.205

3.  Synaptobrevin Transmembrane Domain Dimerization Studied by Multiscale Molecular Dynamics Simulations.

Authors:  Jing Han; Kristyna Pluhackova; Tsjerk A Wassenaar; Rainer A Böckmann
Journal:  Biophys J       Date:  2015-08-18       Impact factor: 4.033

4.  Cholesterol modulates the dimer interface of the β₂-adrenergic receptor via cholesterol occupancy sites.

Authors:  Xavier Prasanna; Amitabha Chattopadhyay; Durba Sengupta
Journal:  Biophys J       Date:  2014-03-18       Impact factor: 4.033

5.  Reorientation and dimerization of the membrane-bound antimicrobial peptide PGLa from microsecond all-atom MD simulations.

Authors:  Jakob P Ulmschneider; Jeremy C Smith; Martin B Ulmschneider; Anne S Ulrich; Erik Strandberg
Journal:  Biophys J       Date:  2012-08-08       Impact factor: 4.033

6.  Inserting Small Molecules across Membrane Mixtures: Insight from the Potential of Mean Force.

Authors:  Alessia Centi; Arghya Dutta; Sapun H Parekh; Tristan Bereau
Journal:  Biophys J       Date:  2020-02-04       Impact factor: 4.033

7.  Conformational flexibility of the leucine binding protein examined by protein domain coarse-grained molecular dynamics.

Authors:  Iwona Siuda; Lea Thøgersen
Journal:  J Mol Model       Date:  2013-09-19       Impact factor: 1.810

8.  Association of Peripheral Membrane Proteins with Membranes: Free Energy of Binding of GRP1 PH Domain with Phosphatidylinositol Phosphate-Containing Model Bilayers.

Authors:  Fiona B Naughton; Antreas C Kalli; Mark S P Sansom
Journal:  J Phys Chem Lett       Date:  2016-03-17       Impact factor: 6.475

9.  Prediction, refinement, and persistency of transmembrane helix dimers in lipid bilayers using implicit and explicit solvent/lipid representations: microsecond molecular dynamics simulations of ErbB1/B2 and EphA1.

Authors:  Liqun Zhang; Alexander J Sodt; Richard M Venable; Richard W Pastor; Matthias Buck
Journal:  Proteins       Date:  2012-11-05

10.  Membrane-mediated protein-protein interactions and connection to elastic models: a coarse-grained simulation analysis of gramicidin A association.

Authors:  Jejoong Yoo; Qiang Cui
Journal:  Biophys J       Date:  2013-01-08       Impact factor: 4.033

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