Literature DB >> 2072863

The order of sequence alignment can bias the selection of tree topology.

J A Lake.   

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Year:  1991        PMID: 2072863     DOI: 10.1093/oxfordjournals.molbev.a040654

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


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  30 in total

1.  Horizontal gene transfer among genomes: the complexity hypothesis.

Authors:  R Jain; M C Rivera; J A Lake
Journal:  Proc Natl Acad Sci U S A       Date:  1999-03-30       Impact factor: 11.205

2.  Stochastic models for horizontal gene transfer: taking a random walk through tree space.

Authors:  Marc A Suchard
Journal:  Genetics       Date:  2005-03-21       Impact factor: 4.562

3.  Early evolutionary relationships among known life forms inferred from elongation factor EF-2/EF-G sequences: phylogenetic coherence and structure of the archaeal domain.

Authors:  P Cammarano; P Palm; R Creti; E Ceccarelli; A M Sanangelantoni; O Tiboni
Journal:  J Mol Evol       Date:  1992-05       Impact factor: 2.395

4.  Problems and solutions for estimating indel rates and length distributions.

Authors:  Reed A Cartwright
Journal:  Mol Biol Evol       Date:  2008-11-28       Impact factor: 16.240

5.  Phylogenomic evidence for multiple losses of flight in ratite birds.

Authors:  John Harshman; Edward L Braun; Michael J Braun; Christopher J Huddleston; Rauri C K Bowie; Jena L Chojnowski; Shannon J Hackett; Kin-Lan Han; Rebecca T Kimball; Ben D Marks; Kathleen J Miglia; William S Moore; Sushma Reddy; Frederick H Sheldon; David W Steadman; Scott J Steppan; Christopher C Witt; Tamaki Yuri
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-02       Impact factor: 11.205

6.  Improving phylogenetic analyses by incorporating additional information from genetic sequence databases.

Authors:  Li-Jung Liang; Robert E Weiss; Benjamin Redelings; Marc A Suchard
Journal:  Bioinformatics       Date:  2009-08-06       Impact factor: 6.937

Review 7.  Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes.

Authors:  R S Gupta
Journal:  Microbiol Mol Biol Rev       Date:  1998-12       Impact factor: 11.056

8.  Multiple Sequence Alignment Averaging Improves Phylogeny Reconstruction.

Authors:  Haim Ashkenazy; Itamar Sela; Eli Levy Karin; Giddy Landan; Tal Pupko
Journal:  Syst Biol       Date:  2019-01-01       Impact factor: 15.683

9.  Evaluating Statistical Multiple Sequence Alignment in Comparison to Other Alignment Methods on Protein Data Sets.

Authors:  Michael Nute; Ehsan Saleh; Tandy Warnow
Journal:  Syst Biol       Date:  2019-05-01       Impact factor: 15.683

10.  A Clustering Optimization Strategy for Molecular Taxonomy Applied to Planktonic Foraminifera SSU rDNA.

Authors:  Markus Göker; Guido W Grimm; Alexander F Auch; Ralf Aurahs; Michal Kučera
Journal:  Evol Bioinform Online       Date:  2010-09-09       Impact factor: 1.625

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