Literature DB >> 20725990

Use of cancer-specific genomic rearrangements to quantify disease burden in plasma from patients with solid tumors.

David J McBride1, Arto K Orpana, Christos Sotiriou, Heikki Joensuu, Philip J Stephens, Laura J Mudie, Eija Hämäläinen, Lucy A Stebbings, Leif C Andersson, Adrienne M Flanagan, Virginie Durbecq, Michail Ignatiadis, Olli Kallioniemi, Caroline A Heckman, Kari Alitalo, Henrik Edgren, P Andrew Futreal, Michael R Stratton, Peter J Campbell.   

Abstract

Detection of recurrent somatic rearrangements routinely allows monitoring of residual disease burden in leukemias, but is not used for most solid tumors. However, next-generation sequencing now allows rapid identification of patient-specific rearrangements in solid tumors. We mapped genomic rearrangements in three cancers and showed that PCR assays for rearrangements could detect a single copy of the tumor genome in plasma without false positives. Disease status, drug responsiveness, and incipient relapse could be serially assessed. In future, this strategy could be readily established in diagnostic laboratories, with major impact on monitoring of disease status and personalizing treatment of solid tumors.
© 2010 Wiley-Liss, Inc.

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Year:  2010        PMID: 20725990      PMCID: PMC3145117          DOI: 10.1002/gcc.20815

Source DB:  PubMed          Journal:  Genes Chromosomes Cancer        ISSN: 1045-2257            Impact factor:   5.006


  28 in total

1.  Accurate determination of relative messenger RNA levels by RT-PCR.

Authors:  J Stenman; P Finne; A Ståhls; R Grénman; U H Stenman; A Palotie; A Orpana
Journal:  Nat Biotechnol       Date:  1999-07       Impact factor: 54.908

2.  Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.

Authors:  Scott A Tomlins; Daniel R Rhodes; Sven Perner; Saravana M Dhanasekaran; Rohit Mehra; Xiao-Wei Sun; Sooryanarayana Varambally; Xuhong Cao; Joelle Tchinda; Rainer Kuefer; Charles Lee; James E Montie; Rajal B Shah; Kenneth J Pienta; Mark A Rubin; Arul M Chinnaiyan
Journal:  Science       Date:  2005-10-28       Impact factor: 47.728

3.  Parameters of the human genome.

Authors:  N E Morton
Journal:  Proc Natl Acad Sci U S A       Date:  1991-09-01       Impact factor: 11.205

4.  Detection and quantification of mutations in the plasma of patients with colorectal tumors.

Authors:  Frank Diehl; Meng Li; Devin Dressman; Yiping He; Dong Shen; Steve Szabo; Luis A Diaz; Steven N Goodman; Kerstin A David; Hartmut Juhl; Kenneth W Kinzler; Bert Vogelstein
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-28       Impact factor: 11.205

5.  Development of personalized tumor biomarkers using massively parallel sequencing.

Authors:  Rebecca J Leary; Isaac Kinde; Frank Diehl; Kerstin Schmidt; Chris Clouser; Cisilya Duncan; Alena Antipova; Clarence Lee; Kevin McKernan; Francisco M De La Vega; Kenneth W Kinzler; Bert Vogelstein; Luis A Diaz; Victor E Velculescu
Journal:  Sci Transl Med       Date:  2010-02-24       Impact factor: 17.956

6.  Microsatellite alterations in serum DNA of head and neck cancer patients.

Authors:  H Nawroz; W Koch; P Anker; M Stroun; D Sidransky
Journal:  Nat Med       Date:  1996-09       Impact factor: 53.440

Review 7.  A census of human cancer genes.

Authors:  P Andrew Futreal; Lachlan Coin; Mhairi Marshall; Thomas Down; Timothy Hubbard; Richard Wooster; Nazneen Rahman; Michael R Stratton
Journal:  Nat Rev Cancer       Date:  2004-03       Impact factor: 60.716

8.  Identification of the transforming EML4-ALK fusion gene in non-small-cell lung cancer.

Authors:  Manabu Soda; Young Lim Choi; Munehiro Enomoto; Shuji Takada; Yoshihiro Yamashita; Shunpei Ishikawa; Shin-ichiro Fujiwara; Hideki Watanabe; Kentaro Kurashina; Hisashi Hatanaka; Masashi Bando; Shoji Ohno; Yuichi Ishikawa; Hiroyuki Aburatani; Toshiro Niki; Yasunori Sohara; Yukihiko Sugiyama; Hiroyuki Mano
Journal:  Nature       Date:  2007-07-11       Impact factor: 49.962

9.  Rapid clearance of fetal DNA from maternal plasma.

Authors:  Y M Lo; J Zhang; T N Leung; T K Lau; A M Chang; N M Hjelm
Journal:  Am J Hum Genet       Date:  1999-01       Impact factor: 11.025

10.  Incidence and prognostic value of tumour cells detected by RT-PCR in peripheral blood stem cell collections from patients with Ewing tumour.

Authors:  J Vermeulen; S Ballet; O Oberlin; M Peter; G Pierron; E Longavenne; V Laurence; J Kanold; P Chastagner; O Lejars; J-Y Blay; P Marec-Berard; J Michon; O Delattre; G Schleiermacher
Journal:  Br J Cancer       Date:  2006-10-31       Impact factor: 7.640

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  82 in total

Review 1.  Clinical implementation of comprehensive strategies to characterize cancer genomes: opportunities and challenges.

Authors:  Laura E MacConaill; Paul Van Hummelen; Matthew Meyerson; William C Hahn
Journal:  Cancer Discov       Date:  2011-09       Impact factor: 39.397

2.  Next-generation sequencing for cancer diagnostics: a practical perspective.

Authors:  Cliff Meldrum; Maria A Doyle; Richard W Tothill
Journal:  Clin Biochem Rev       Date:  2011-11

Review 3.  Circulating tumour cells and cell-free DNA as tools for managing breast cancer.

Authors:  Leticia De Mattos-Arruda; Javier Cortes; Libero Santarpia; Ana Vivancos; Josep Tabernero; Jorge S Reis-Filho; Joan Seoane
Journal:  Nat Rev Clin Oncol       Date:  2013-05-28       Impact factor: 66.675

4.  Early Noninvasive Detection of Response to Targeted Therapy in Non-Small Cell Lung Cancer.

Authors:  Jillian Phallen; Alessandro Leal; Brian D Woodward; Patrick M Forde; Jarushka Naidoo; Kristen A Marrone; Julie R Brahmer; Jacob Fiksel; Jamie E Medina; Stephen Cristiano; Doreen N Palsgrove; Christopher D Gocke; Daniel C Bruhm; Parissa Keshavarzian; Vilmos Adleff; Elizabeth Weihe; Valsamo Anagnostou; Robert B Scharpf; Victor E Velculescu; Hatim Husain
Journal:  Cancer Res       Date:  2018-12-20       Impact factor: 12.701

5.  Lengthening and shortening of plasma DNA in hepatocellular carcinoma patients.

Authors:  Peiyong Jiang; Carol W M Chan; K C Allen Chan; Suk Hang Cheng; John Wong; Vincent Wai-Sun Wong; Grace L H Wong; Stephen L Chan; Tony S K Mok; Henry L Y Chan; Paul B S Lai; Rossa W K Chiu; Y M Dennis Lo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-02       Impact factor: 11.205

Review 6.  Circulating cell-free DNA for non-invasive cancer management.

Authors:  Caitlin M Stewart; Dana W Y Tsui
Journal:  Cancer Genet       Date:  2018-03-11

Review 7.  Direct mutation analysis by high-throughput sequencing: from germline to low-abundant, somatic variants.

Authors:  Michael Gundry; Jan Vijg
Journal:  Mutat Res       Date:  2011-10-12       Impact factor: 2.433

8.  Circulating tumor DNA dynamically predicts response and/or relapse in patients with hematological malignancies.

Authors:  Sousuke Nakamura; Kazuaki Yokoyama; Nozomi Yusa; Miho Ogawa; Tomomi Takei; Asako Kobayashi; Mika Ito; Eigo Shimizu; Rika Kasajima; Yuka Wada; Rui Yamaguchi; Seiya Imoto; Tokiko Nagamura-Inoue; Satoru Miyano; Arinobu Tojo
Journal:  Int J Hematol       Date:  2018-06-29       Impact factor: 2.490

Review 9.  Blood-based analyses of cancer: circulating tumor cells and circulating tumor DNA.

Authors:  Daniel A Haber; Victor E Velculescu
Journal:  Cancer Discov       Date:  2014-05-06       Impact factor: 39.397

Review 10.  Circulating Tumor Cells, DNA, and mRNA: Potential for Clinical Utility in Patients With Melanoma.

Authors:  Melody J Xu; Jay F Dorsey; Ravi Amaravadi; Giorgos Karakousis; Charles B Simone; Xiaowei Xu; Wei Xu; Erica L Carpenter; Lynn Schuchter; Gary D Kao
Journal:  Oncologist       Date:  2015-11-27
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