Literature DB >> 20724046

Correlations between in situ denitrification activity and nir-gene abundances in pristine and impacted prairie streams.

David W Graham1, Clare Trippett, Walter K Dodds, Jonathan M O'Brien, Eric B K Banner, Ian M Head, Marilyn S Smith, Richard K Yang, Charles W Knapp.   

Abstract

Denitrification is a process that reduces nitrogen levels in headwaters and other streams. We compared nirS and nirK abundances with the absolute rate of denitrification, the longitudinal coefficient of denitrification (i.e., Kden, which represents optimal denitrification rates at given environmental conditions), and water quality in seven prairie streams to determine if nir-gene abundances explain denitrification activity. Previous work showed that absolute rates of denitrification correlate with nitrate levels; however, no correlation has been found for denitrification efficiency, which we hypothesise might be related to gene abundances. Water-column nitrate and soluble-reactive phosphorus levels significantly correlated with absolute rates of denitrification, but nir-gene abundances did not. However, nirS and nirK abundances significantly correlated with Kden, as well as phosphorus, although no correlation was found between Kden and nitrate. These data confirm that absolute denitrification rates are controlled by nitrate load, but intrinsic denitrification efficiency is linked to nirS and nirK gene abundances. Copyright (c) 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20724046      PMCID: PMC3071025          DOI: 10.1016/j.envpol.2010.07.010

Source DB:  PubMed          Journal:  Environ Pollut        ISSN: 0269-7491            Impact factor:   8.071


  13 in total

Review 1.  Finding the missing link between diversity and activity using denitrifying bacteria as a model functional community.

Authors:  Laurent Philippot; Sara Hallin
Journal:  Curr Opin Microbiol       Date:  2005-06       Impact factor: 7.934

Review 2.  Environmental controls on denitrifying communities and denitrification rates: insights from molecular methods.

Authors:  Matthew D Wallenstein; David D Myrold; Mary Firestone; Mary Voytek
Journal:  Ecol Appl       Date:  2006-12       Impact factor: 4.657

Review 3.  Denitrification across landscapes and waterscapes: a synthesis.

Authors:  S Seitzinger; J A Harrison; J K Böhlke; A F Bouwman; R Lowrance; B Peterson; C Tobias; G Van Drecht
Journal:  Ecol Appl       Date:  2006-12       Impact factor: 4.657

4.  The enigma of progress in denitrification research.

Authors:  Eric A Davidson; Sybil Seitzinger
Journal:  Ecol Appl       Date:  2006-12       Impact factor: 4.657

5.  Seasonal and diel distributions of denitrifying and bacterial communities in a hypersaline microbial mat (Camargue, France).

Authors:  Christelle Desnues; Valérie D Michotey; Andrea Wieland; Cui Zhizang; Aude Fourçans; Robert Duran; Patricia C Bonin
Journal:  Water Res       Date:  2007-05-01       Impact factor: 11.236

6.  Nitrogen cycle: out of reach.

Authors:  Sybil Seitzinger
Journal:  Nature       Date:  2008-03-13       Impact factor: 49.962

7.  Stream denitrification across biomes and its response to anthropogenic nitrate loading.

Authors:  Patrick J Mulholland; Ashley M Helton; Geoffrey C Poole; Robert O Hall; Stephen K Hamilton; Bruce J Peterson; Jennifer L Tank; Linda R Ashkenas; Lee W Cooper; Clifford N Dahm; Walter K Dodds; Stuart E G Findlay; Stanley V Gregory; Nancy B Grimm; Sherri L Johnson; William H McDowell; Judy L Meyer; H Maurice Valett; Jackson R Webster; Clay P Arango; Jake J Beaulieu; Melody J Bernot; Amy J Burgin; Chelsea L Crenshaw; Laura T Johnson; B R Niederlehner; Jonathan M O'Brien; Jody D Potter; Richard W Sheibley; Daniel J Sobota; Suzanne M Thomas
Journal:  Nature       Date:  2008-03-13       Impact factor: 49.962

8.  Quantitative detection of the nosZ gene, encoding nitrous oxide reductase, and comparison of the abundances of 16S rRNA, narG, nirK, and nosZ genes in soils.

Authors:  S Henry; D Bru; B Stres; S Hallet; L Philippot
Journal:  Appl Environ Microbiol       Date:  2006-08       Impact factor: 4.792

Review 9.  Metalloenzymes of the denitrification pathway.

Authors:  P Tavares; A S Pereira; J J G Moura; I Moura
Journal:  J Inorg Biochem       Date:  2006-09-19       Impact factor: 4.155

Review 10.  Nitrogen in aquatic ecosystems.

Authors:  Nancy N Rabalais
Journal:  Ambio       Date:  2002-03       Impact factor: 5.129

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  8 in total

1.  Attached and Suspended Denitrifier Communities in Pristine Limestone Aquifers Harbor High Fractions of Potential Autotrophs Oxidizing Reduced Iron and Sulfur Compounds.

Authors:  M Herrmann; S Opitz; R Harzer; K U Totsche; K Küsel
Journal:  Microb Ecol       Date:  2017-02-18       Impact factor: 4.552

2.  Variations of the nirS-, nirK-, and nosZ-denitrifying bacterial communities in a northern Chinese soil as affected by different long-term irrigation regimes.

Authors:  Ya-Dong Yang; Yue-Gao Hu; Zhi-Min Wang; Zhao-Hai Zeng
Journal:  Environ Sci Pollut Res Int       Date:  2018-03-08       Impact factor: 4.223

3.  Nitrogen-cycling genes in epilithic biofilms of oligotrophic high-altitude lakes (central Pyrenees, Spain).

Authors:  Maria Vila-Costa; Mireia Bartrons; Jordi Catalan; Emilio O Casamayor
Journal:  Microb Ecol       Date:  2014-04-18       Impact factor: 4.552

4.  Nitrogen-fixation activity and the abundance and taxonomy of nifH genes in agricultural, pristine, and urban prairie stream sediments chronically exposed to different levels of nitrogen loading.

Authors:  Ingrid R Caton; Todd M Caton; Mark A Schneegurt
Journal:  Arch Microbiol       Date:  2018-01-15       Impact factor: 2.552

5.  Using laboratory-generated biosolids to evaluate the microbial ecotoxicity of triclosan in a simulated land application scenario.

Authors:  Ryan M Holzem; Courtney M Gardner; Heather M Stapleton; Claudia K Gunsch
Journal:  Environ Sci Pollut Res Int       Date:  2018-02-06       Impact factor: 4.223

6.  Functional gene pyrosequencing reveals core proteobacterial denitrifiers in boreal lakes.

Authors:  Jatta Saarenheimo; Marja Annika Tiirola; Antti J Rissanen
Journal:  Front Microbiol       Date:  2015-07-01       Impact factor: 5.640

7.  Microbial community structure across a wastewater-impacted riparian buffer zone in the southeastern coastal plain.

Authors:  T F Ducey; P R Johnson; A D Shriner; T A Matheny; P G Hunt
Journal:  Open Microbiol J       Date:  2013-06-28

8.  Response of Spatial Patterns of Denitrifying Bacteria Communities to Water Properties in the Stream Inlets at Dianchi Lake, China.

Authors:  Neng Yi; Yan Gao; Zhenhua Zhang; Yan Wang; Xinhong Liu; Li Zhang; Shaohua Yan
Journal:  Int J Genomics       Date:  2015-10-04       Impact factor: 2.326

  8 in total

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