Literature DB >> 20716010

Statistical methods for assessment of added usefulness of new biomarkers.

Michael J Pencina1, Ralph B D'Agostino, Ramachandran S Vasan.   

Abstract

The discovery and development of new biomarkers continues to be an exciting and promising field. Improvement in prediction of risk of developing disease is one of the key motivations in these pursuits. Appropriate statistical measures are necessary for drawing meaningful conclusions about the clinical usefulness of these new markers. In this review, we present several novel metrics proposed to serve this purpose. We use reclassification tables constructed on the basis of clinically meaningful disease risk categories to discuss the concepts of calibration, risk separation, risk discrimination, and risk classification accuracy. We discuss the notion that the net reclassification improvement (NRI) is a simple yet informative way to summarize information contained in risk reclassification tables. In the absence of meaningful risk categories, we suggest a 'category-less' version of the NRI and integrated discrimination improvement as metrics to summarize the incremental value of new biomarkers. We also suggest that predictiveness curves be preferred to receiver operating characteristic curves as visual descriptors of a statistical model's ability to separate predicted probabilities of disease events. Reporting of standard metrics, including measures of relative risk and the c statistic, is still recommended. These concepts are illustrated with a risk prediction example using data from the Framingham Heart Study.

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Year:  2010        PMID: 20716010      PMCID: PMC3155999          DOI: 10.1515/CCLM.2010.340

Source DB:  PubMed          Journal:  Clin Chem Lab Med        ISSN: 1434-6621            Impact factor:   3.694


  28 in total

1.  Overall C as a measure of discrimination in survival analysis: model specific population value and confidence interval estimation.

Authors:  Michael J Pencina; Ralph B D'Agostino
Journal:  Stat Med       Date:  2004-07-15       Impact factor: 2.373

Review 2.  Assessment of claims of improved prediction beyond the Framingham risk score.

Authors:  Ioanna Tzoulaki; George Liberopoulos; John P A Ioannidis
Journal:  JAMA       Date:  2009-12-02       Impact factor: 56.272

3.  Prediction of coronary heart disease using risk factor categories.

Authors:  P W Wilson; R B D'Agostino; D Levy; A M Belanger; H Silbershatz; W B Kannel
Journal:  Circulation       Date:  1998-05-12       Impact factor: 29.690

4.  An assessment of clinically useful measures of the consequences of treatment.

Authors:  A Laupacis; D L Sackett; R S Roberts
Journal:  N Engl J Med       Date:  1988-06-30       Impact factor: 91.245

5.  The meaning and use of the area under a receiver operating characteristic (ROC) curve.

Authors:  J A Hanley; B J McNeil
Journal:  Radiology       Date:  1982-04       Impact factor: 11.105

6.  Profile for estimating risk of heart failure.

Authors:  W B Kannel; R B D'Agostino; H Silbershatz; A J Belanger; P W Wilson; D Levy
Journal:  Arch Intern Med       Date:  1999-06-14

7.  Projecting individualized probabilities of developing breast cancer for white females who are being examined annually.

Authors:  M H Gail; L A Brinton; D P Byar; D K Corle; S B Green; C Schairer; J J Mulvihill
Journal:  J Natl Cancer Inst       Date:  1989-12-20       Impact factor: 13.506

8.  Relations of biomarkers of distinct pathophysiological pathways and atrial fibrillation incidence in the community.

Authors:  Renate B Schnabel; Martin G Larson; Jennifer F Yamamoto; Lisa M Sullivan; Michael J Pencina; James B Meigs; Geoffrey H Tofler; Jacob Selhub; Paul F Jacques; Philip A Wolf; Jared W Magnani; Patrick T Ellinor; Thomas J Wang; Daniel Levy; Ramachandran S Vasan; Emelia J Benjamin
Journal:  Circulation       Date:  2010-01-04       Impact factor: 29.690

9.  A general cardiovascular risk profile: the Framingham Study.

Authors:  W B Kannel; D McGee; T Gordon
Journal:  Am J Cardiol       Date:  1976-07       Impact factor: 2.778

10.  C-reactive protein and reclassification of cardiovascular risk in the Framingham Heart Study.

Authors:  Peter W F Wilson; Michael Pencina; Paul Jacques; Jacob Selhub; Ralph D'Agostino; Christopher J O'Donnell
Journal:  Circ Cardiovasc Qual Outcomes       Date:  2008-11-09
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  115 in total

1.  Risk prediction measures for case-cohort and nested case-control designs: an application to cardiovascular disease.

Authors:  Andrea Ganna; Marie Reilly; Ulf de Faire; Nancy Pedersen; Patrik Magnusson; Erik Ingelsson
Journal:  Am J Epidemiol       Date:  2012-03-06       Impact factor: 4.897

2.  Association between peritransplant kidney injury biomarkers and 1-year allograft outcomes.

Authors:  Isaac E Hall; Mona D Doshi; Peter P Reese; Richard J Marcus; Heather Thiessen-Philbrook; Chirag R Parikh
Journal:  Clin J Am Soc Nephrol       Date:  2012-06-21       Impact factor: 8.237

3.  Implications of CA19-9 elevation for survival, staging, and treatment sequencing in intrahepatic cholangiocarcinoma: A national cohort analysis.

Authors:  John R Bergquist; Tommy Ivanics; Curtis B Storlie; Ryan T Groeschl; May C Tee; Elizabeth B Habermann; Rory L Smoot; Michael L Kendrick; Michael B Farnell; Lewis R Roberts; Gregory J Gores; David M Nagorney; Mark J Truty
Journal:  J Surg Oncol       Date:  2016-07-20       Impact factor: 3.454

4.  Revised Framingham Stroke Risk Score, Nontraditional Risk Markers, and Incident Stroke in a Multiethnic Cohort.

Authors:  Peter Flueckiger; Will Longstreth; David Herrington; Joseph Yeboah
Journal:  Stroke       Date:  2018-01-08       Impact factor: 7.914

5.  Prognostic value of risk score and urinary markers in idiopathic membranous nephropathy.

Authors:  Jan A J G van den Brand; Julia M Hofstra; Jack F M Wetzels
Journal:  Clin J Am Soc Nephrol       Date:  2012-05-17       Impact factor: 8.237

Review 6.  Biomarkers for incident CKD: a new framework for interpreting the literature.

Authors:  Michael G Shlipak; Erica C Day
Journal:  Nat Rev Nephrol       Date:  2013-06-11       Impact factor: 28.314

7.  Urinary biomarker incorporation into the renal angina index early in intensive care unit admission optimizes acute kidney injury prediction in critically ill children: a prospective cohort study.

Authors:  Shina Menon; Stuart L Goldstein; Theresa Mottes; Lin Fei; Ahmad Kaddourah; Tara Terrell; Patricia Arnold; Michael R Bennett; Rajit K Basu
Journal:  Nephrol Dial Transplant       Date:  2016-02-02       Impact factor: 5.992

8.  N-Acetyl-β-D-Glucosaminidase Does Not Enhance Prediction of Cardiovascular or All-Cause Mortality by Albuminuria in a Low-Risk Population.

Authors:  Marit D Solbu; Ingrid Toft; Maja-Lisa Løchen; Ellisiv B Mathiesen; Bjørn O Eriksen; Toralf Melsom; Inger Njølstad; Tom Wilsgaard; Trond G Jenssen
Journal:  J Am Soc Nephrol       Date:  2015-06-05       Impact factor: 10.121

9.  N-terminal pro-B-type natriuretic peptide, left ventricular mass, and incident heart failure: Multi-Ethnic Study of Atherosclerosis.

Authors:  Eui-Young Choi; Hossein Bahrami; Colin O Wu; Philip Greenland; Mary Cushman; Lori B Daniels; Andre L C Almeida; Kihei Yoneyama; Anders Opdahl; Aditya Jain; Michael H Criqui; David Siscovick; Christine Darwin; Alan Maisel; David A Bluemke; Joao A C Lima
Journal:  Circ Heart Fail       Date:  2012-10-02       Impact factor: 8.790

10.  Plasma NT-proBNP as predictor of change in functional status, cardiovascular morbidity and mortality in the oldest old: the Leiden 85-plus study.

Authors:  Petra G van Peet; Anton J M de Craen; Jacobijn Gussekloo; Wouter de Ruijter
Journal:  Age (Dordr)       Date:  2014-05-08
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