Literature DB >> 20711996

Gene regulatory networks governing haematopoietic stem cell development and identity.

John E Pimanda1, Berthold Göttgens.   

Abstract

Development can be viewed as a dynamic progression through regulatory states which characterise the various cell types within a given differentiation cascade. To understand the progression of regulatory states that define the origin and subsequent development of haematopoietic stem cells, the first imperative is to understand the ontogeny of haematopoiesis. We are fortunate that the ontogeny of blood development is one of the best characterized mammalian developmental systems. However, the field is still in its infancy with regard to the reconstruction of gene regulatory networks and their interactions with cell signalling cascades that drive a mesodermal progenitor to adopt the identity of a haematopoietic stem cell and beyond. Nevertheless, a framework to dissect these networks and comprehend the logic of its circuitry does exist and although they may not as yet be available, a sense for the tools that will be required to achieve this aim is also emerging. In this review we cover the fundamentals of network architecture, methods used to reconstruct networks, current knowledge of haematopoietic and related transcriptional networks, current challenges and future outlook.

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Mesh:

Year:  2010        PMID: 20711996     DOI: 10.1387/ijdb.093038jp

Source DB:  PubMed          Journal:  Int J Dev Biol        ISSN: 0214-6282            Impact factor:   2.203


  23 in total

1.  Screening for genes that regulate the differentiation of human megakaryocytic lineage cells.

Authors:  Fangfang Zhu; Mingye Feng; Rahul Sinha; Jun Seita; Yasuo Mori; Irving L Weissman
Journal:  Proc Natl Acad Sci U S A       Date:  2018-08-27       Impact factor: 11.205

2.  A Runx1-Smad6 rheostat controls Runx1 activity during embryonic hematopoiesis.

Authors:  Kathy Knezevic; Thomas Bee; Nicola K Wilson; Mary E Janes; Sarah Kinston; Stéphanie Polderdijk; Anja Kolb-Kokocinski; Katrin Ottersbach; Niv Pencovich; Yoram Groner; Marella de Bruijn; Berthold Göttgens; John E Pimanda
Journal:  Mol Cell Biol       Date:  2011-05-16       Impact factor: 4.272

3.  A quantitative proteomics approach identifies ETV6 and IKZF1 as new regulators of an ERG-driven transcriptional network.

Authors:  Ashwin Unnikrishnan; Yi F Guan; Yizhou Huang; Dominik Beck; Julie A I Thoms; Sofie Peirs; Kathy Knezevic; Shiyong Ma; Inge V de Walle; Ineke de Jong; Zara Ali; Ling Zhong; Mark J Raftery; Tom Taghon; Jonas Larsson; Karen L MacKenzie; Pieter Van Vlierberghe; Jason W H Wong; John E Pimanda
Journal:  Nucleic Acids Res       Date:  2016-09-06       Impact factor: 16.971

4.  Current progress and challenges in HIV gene therapy.

Authors:  Janet Chung; John J Rossi; Ulrike Jung
Journal:  Future Virol       Date:  2011-11-01       Impact factor: 1.831

5.  MicroRNA-23a mediates post-transcriptional regulation of CXCL12 in bone marrow stromal cells.

Authors:  Laleh S Arabanian; Fernando A Fierro; Friedrich Stölzel; Carolin Heder; David M Poitz; Ruth H Strasser; Manja Wobus; Martin Borhäuser; Ruben A Ferrer; Uwe Platzbecker; Matthias Schieker; Denitsa Docheva; Gerhard Ehninger; Thomas Illmer
Journal:  Haematologica       Date:  2014-02-28       Impact factor: 9.941

6.  Unexpected redundancy of Gpr56 and Gpr97 during hematopoietic cell development and differentiation.

Authors:  Antonio Maglitto; Samanta A Mariani; Emma de Pater; Carmen Rodriguez-Seoane; Chris S Vink; Xianhua Piao; Mari-Liis Lukke; Elaine Dzierzak
Journal:  Blood Adv       Date:  2021-02-09

7.  An experimentally validated network of nine haematopoietic transcription factors reveals mechanisms of cell state stability.

Authors:  Judith Schütte; Huange Wang; Stella Antoniou; Andrew Jarratt; Nicola K Wilson; Joey Riepsaame; Fernando J Calero-Nieto; Victoria Moignard; Silvia Basilico; Sarah J Kinston; Rebecca L Hannah; Mun Chiang Chan; Sylvia T Nürnberg; Willem H Ouwehand; Nicola Bonzanni; Marella Ftr de Bruijn; Berthold Göttgens
Journal:  Elife       Date:  2016-02-22       Impact factor: 8.140

8.  Identification of novel regulators of developmental hematopoiesis using Endoglin regulatory elements as molecular probes.

Authors:  Rabab Nasrallah; Eva M Fast; Parham Solaimani; Kathy Knezevic; Alexia Eliades; Rahima Patel; Roshana Thambyrajah; Ashwin Unnikrishnan; Julie Thoms; Dominik Beck; Chris S Vink; Aileen Smith; Jason Wong; Mairi Shepherd; David Kent; Rahul Roychoudhuri; Fabian Paul; Julia Klippert; Annette Hammes; Thomas Willnow; Bertie Göttgens; Elaine Dzierzak; Leonard I Zon; George Lacaud; Valerie Kouskoff; John E Pimanda
Journal:  Blood       Date:  2016-08-23       Impact factor: 22.113

9.  Porcine tissue-specific regulatory networks derived from meta-analysis of the transcriptome.

Authors:  Dafne Pérez-Montarelo; Nicholas J Hudson; Ana I Fernández; Yuliaxis Ramayo-Caldas; Brian P Dalrymple; Antonio Reverter
Journal:  PLoS One       Date:  2012-09-26       Impact factor: 3.240

Review 10.  RUNX1: A microRNA hub in normal and malignant hematopoiesis.

Authors:  Stefano Rossetti; Nicoletta Sacchi
Journal:  Int J Mol Sci       Date:  2013-01-14       Impact factor: 5.923

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