Literature DB >> 20711441

An Association Test for Multiple Traits Based on the Generalized Kendall's Tau.

Heping Zhang, Ching-Ti Liu, Xueqin Wang.   

Abstract

In many genetics studies, especially in the investigation of mental illness and behavioral disorders, it is common for researchers to collect multiple phenotypes to characterize the complex disease of interest. It may be advantageous to analyze those phenotypic measurements simultaneously if they share a similar genetic mechanism. In this study, we present a nonparametric approach to studying multiple traits together rather than examining each trait separately. Through simulation we compared the nominal type I error and power of our proposed test to an existing test, i.e., a generalized family-based association test. The empirical results suggest that our proposed approach is superior to the existing test in the analysis of ordinal traits. The advantage is demonstrated on a data set concerning alcohol dependence. In this application, the use of our methods enhanced the signal of the association test.

Entities:  

Year:  2010        PMID: 20711441      PMCID: PMC2920220          DOI: 10.1198/jasa.2009.ap08387

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  34 in total

1.  A general test of association for quantitative traits in nuclear families.

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Journal:  Am J Hum Genet       Date:  2000-01       Impact factor: 11.025

2.  A unified framework for transmission-disequilibrium test analysis of discrete and continuous traits.

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3.  Complement factor H polymorphism in age-related macular degeneration.

Authors:  Robert J Klein; Caroline Zeiss; Emily Y Chew; Jen-Yue Tsai; Richard S Sackler; Chad Haynes; Alice K Henning; John Paul SanGiovanni; Shrikant M Mane; Susan T Mayne; Michael B Bracken; Frederick L Ferris; Jurg Ott; Colin Barnstable; Josephine Hoh
Journal:  Science       Date:  2005-03-10       Impact factor: 47.728

4.  A genome-wide association study identifies IL23R as an inflammatory bowel disease gene.

Authors:  Richard H Duerr; Kent D Taylor; Steven R Brant; John D Rioux; Mark S Silverberg; Mark J Daly; A Hillary Steinhart; Clara Abraham; Miguel Regueiro; Anne Griffiths; Themistocles Dassopoulos; Alain Bitton; Huiying Yang; Stephan Targan; Lisa Wu Datta; Emily O Kistner; L Philip Schumm; Annette T Lee; Peter K Gregersen; M Michael Barmada; Jerome I Rotter; Dan L Nicolae; Judy H Cho
Journal:  Science       Date:  2006-10-26       Impact factor: 47.728

5.  Family-based association tests for ordinal traits adjusting for covariates.

Authors:  Xueqin Wang; Yuanqing Ye; Heping Zhang
Journal:  Genet Epidemiol       Date:  2006-12       Impact factor: 2.135

6.  Genome scan for Tourette disorder in affected-sibling-pair and multigenerational families.

Authors: 
Journal:  Am J Hum Genet       Date:  2007-02       Impact factor: 11.025

7.  Measuring degree of physical dependence to tobacco smoking with reference to individualization of treatment.

Authors:  K O Fagerström
Journal:  Addict Behav       Date:  1978       Impact factor: 3.913

8.  Genomewide linkage scan for cocaine dependence and related traits: significant linkages for a cocaine-related trait and cocaine-induced paranoia.

Authors:  Joel Gelernter; Carolien Panhuysen; Roger Weiss; Kathleen Brady; Victor Hesselbrock; Bruce Rounsaville; James Poling; Marsha Wilcox; Lindsay Farrer; Henry R Kranzler
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2005-07-05       Impact factor: 3.568

9.  Prevalence, correlates, disability, and comorbidity of DSM-IV alcohol abuse and dependence in the United States: results from the National Epidemiologic Survey on Alcohol and Related Conditions.

Authors:  Deborah S Hasin; Frederick S Stinson; Elizabeth Ogburn; Bridget F Grant
Journal:  Arch Gen Psychiatry       Date:  2007-07

10.  A genome-wide linkage and association study using COGA data.

Authors:  Xiaofeng Zhu; Richard Cooper; Donghui Kan; Guichan Cao; Xiaodong Wu
Journal:  BMC Genet       Date:  2005-12-30       Impact factor: 2.797

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  34 in total

1.  Associating Multivariate Quantitative Phenotypes with Genetic Variants in Family Samples with a Novel Kernel Machine Regression Method.

Authors:  Qi Yan; Daniel E Weeks; Juan C Celedón; Hemant K Tiwari; Bingshan Li; Xiaojing Wang; Wan-Yu Lin; Xiang-Yang Lou; Guimin Gao; Wei Chen; Nianjun Liu
Journal:  Genetics       Date:  2015-10-19       Impact factor: 4.562

2.  Fisher's method of combining dependent statistics using generalizations of the gamma distribution with applications to genetic pleiotropic associations.

Authors:  Qizhai Li; Jiyuan Hu; Juan Ding; Gang Zheng
Journal:  Biostatistics       Date:  2013-10-29       Impact factor: 5.899

3.  Meta-analysis of correlated traits via summary statistics from GWASs with an application in hypertension.

Authors:  Xiaofeng Zhu; Tao Feng; Bamidele O Tayo; Jingjing Liang; J Hunter Young; Nora Franceschini; Jennifer A Smith; Lisa R Yanek; Yan V Sun; Todd L Edwards; Wei Chen; Mike Nalls; Ervin Fox; Michele Sale; Erwin Bottinger; Charles Rotimi; Yongmei Liu; Barbara McKnight; Kiang Liu; Donna K Arnett; Aravinda Chakravati; Richard S Cooper; Susan Redline
Journal:  Am J Hum Genet       Date:  2014-12-11       Impact factor: 11.025

4.  Nonparametric Covariate-Adjusted Association Tests Based on the Generalized Kendall's Tau().

Authors:  Wensheng Zhu; Yuan Jiang; Heping Zhang
Journal:  J Am Stat Assoc       Date:  2012-06-11       Impact factor: 5.033

5.  A nonparametric method to test for associations between rare variants and multiple traits.

Authors:  Ying Zhou; Yangyang Cheng; Wensheng Zhu; Qian Zhou
Journal:  Genet Res (Camb)       Date:  2016       Impact factor: 1.588

6.  Conditional independence test by generalized Kendall's tau with generalized odds ratio.

Authors:  Shuang Ji; Jing Ning; Jing Qin; Dean Follmann
Journal:  Stat Methods Med Res       Date:  2017-02-23       Impact factor: 3.021

7.  Identifying Genetic Variants for Addiction via Propensity Score Adjusted Generalized Kendall's Tau.

Authors:  Yuan Jiang; Ni Li; Heping Zhang
Journal:  J Am Stat Assoc       Date:  2014       Impact factor: 5.033

8.  Multivariate phenotype association analysis by marker-set kernel machine regression.

Authors:  Arnab Maity; Patrick F Sullivan; Jun-Ying Tzeng
Journal:  Genet Epidemiol       Date:  2012-08-16       Impact factor: 2.135

9.  Genetic association test for multiple traits at gene level.

Authors:  Xiaobo Guo; Zhifa Liu; Xueqin Wang; Heping Zhang
Journal:  Genet Epidemiol       Date:  2012-10-02       Impact factor: 2.135

10.  A functional U-statistic method for association analysis of sequencing data.

Authors:  Sneha Jadhav; Xiaoran Tong; Qing Lu
Journal:  Genet Epidemiol       Date:  2017-08-29       Impact factor: 2.135

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