Literature DB >> 23032486

Genetic association test for multiple traits at gene level.

Xiaobo Guo1, Zhifa Liu, Xueqin Wang, Heping Zhang.   

Abstract

Genome-wide association studies (GWASs) at the gene level are commonly used to understand biological mechanisms underlying complex diseases. In general, one response or outcome is used to present a disease of interest in such studies. In this study, we consider a multiple traits association test from the gene level. We propose and examine a class of test statistics that summarizes the association information between single nucleotide polymorphisms (SNPs) and each of the traits. Our simulation studies demonstrate the advantage of gene-based multiple traits association tests when multiple traits share common genes. Using our proposed tests, we reanalyze the dataset from the Study of Addiction: Genetics and Environment (SAGE). Our result validates previous findings while presenting stronger evidence for consideration of multiple traits.
© 2012 Wiley Periodicals, Inc.

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Year:  2012        PMID: 23032486      PMCID: PMC3524409          DOI: 10.1002/gepi.21688

Source DB:  PubMed          Journal:  Genet Epidemiol        ISSN: 0741-0395            Impact factor:   2.135


  23 in total

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2.  Linkage-disequilibrium-based binning affects the interpretation of GWASs.

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Review 3.  Analysing biological pathways in genome-wide association studies.

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4.  Pathway-based approaches for analysis of genomewide association studies.

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Journal:  Am J Hum Genet       Date:  2007-12       Impact factor: 11.025

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Review 6.  Genome-wide association studies for complex traits: consensus, uncertainty and challenges.

Authors:  Mark I McCarthy; Gonçalo R Abecasis; Lon R Cardon; David B Goldstein; Julian Little; John P A Ioannidis; Joel N Hirschhorn
Journal:  Nat Rev Genet       Date:  2008-05       Impact factor: 53.242

7.  From SNPs to genes: disease association at the gene level.

Authors:  Benjamin Lehne; Cathryn M Lewis; Thomas Schlitt
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8.  Comparisons of seven algorithms for pathway analysis using the WTCCC Crohn's Disease dataset.

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Journal:  PLoS One       Date:  2012-01-04       Impact factor: 3.240

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  17 in total

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4.  A genome-wide association study of early spontaneous preterm delivery.

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5.  Pleiotropy analysis of quantitative traits at gene level by multivariate functional linear models.

Authors:  Yifan Wang; Aiyi Liu; James L Mills; Michael Boehnke; Alexander F Wilson; Joan E Bailey-Wilson; Momiao Xiong; Colin O Wu; Ruzong Fan
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6.  A functional U-statistic method for association analysis of sequencing data.

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7.  Quality Control for the Illumina HumanExome BeadChip.

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8.  Powerful and Adaptive Testing for Multi-trait and Multi-SNP Associations with GWAS and Sequencing Data.

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9.  Large scale association analysis for drug addiction: results from SNP to gene.

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10.  NCK2 is significantly associated with opiates addiction in African-origin men.

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