Literature DB >> 20706781

Transfer entropy--a model-free measure of effective connectivity for the neurosciences.

Raul Vicente1, Michael Wibral, Michael Lindner, Gordon Pipa.   

Abstract

Understanding causal relationships, or effective connectivity, between parts of the brain is of utmost importance because a large part of the brain's activity is thought to be internally generated and, hence, quantifying stimulus response relationships alone does not fully describe brain dynamics. Past efforts to determine effective connectivity mostly relied on model based approaches such as Granger causality or dynamic causal modeling. Transfer entropy (TE) is an alternative measure of effective connectivity based on information theory. TE does not require a model of the interaction and is inherently non-linear. We investigated the applicability of TE as a metric in a test for effective connectivity to electrophysiological data based on simulations and magnetoencephalography (MEG) recordings in a simple motor task. In particular, we demonstrate that TE improved the detectability of effective connectivity for non-linear interactions, and for sensor level MEG signals where linear methods are hampered by signal-cross-talk due to volume conduction.

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Year:  2010        PMID: 20706781      PMCID: PMC3040354          DOI: 10.1007/s10827-010-0262-3

Source DB:  PubMed          Journal:  J Comput Neurosci        ISSN: 0929-5313            Impact factor:   1.621


  34 in total

1.  Testing non-linearity and directedness of interactions between neural groups in the macaque inferotemporal cortex.

Authors:  W A Freiwald; P Valdes; J Bosch; R Biscay; J C Jimenez; L M Rodriguez; V Rodriguez; A K Kreiter; W Singer
Journal:  J Neurosci Methods       Date:  1999-12-15       Impact factor: 2.390

2.  Rectification and non-linear pre-processing of EMG signals for cortico-muscular analysis.

Authors:  L J Myers; M Lowery; M O'Malley; C L Vaughan; C Heneghan; A St Clair Gibson; Y X R Harley; R Sreenivasan
Journal:  J Neurosci Methods       Date:  2003-04-15       Impact factor: 2.390

3.  Estimating mutual information.

Authors:  Alexander Kraskov; Harald Stögbauer; Peter Grassberger
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2004-06-23

Review 4.  Nonlinear multivariate analysis of neurophysiological signals.

Authors:  Ernesto Pereda; Rodrigo Quian Quiroga; Joydeep Bhattacharya
Journal:  Prog Neurobiol       Date:  2005-11-14       Impact factor: 11.685

5.  Local information transfer as a spatiotemporal filter for complex systems.

Authors:  Joseph T Lizier; Mikhail Prokopenko; Albert Y Zomaya
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2008-02-15

6.  Directed information flow: a model free measure to analyze causal interactions in event related EEG-MEG-experiments.

Authors:  Hermann Hinrichs; Toemme Noesselt; Hans-Jochen Heinze
Journal:  Hum Brain Mapp       Date:  2008-02       Impact factor: 5.038

7.  Dynamic causal modelling.

Authors:  K J Friston; L Harrison; W Penny
Journal:  Neuroimage       Date:  2003-08       Impact factor: 6.556

8.  Imaging the human motor system's beta-band synchronization during isometric contraction.

Authors:  Jan-Mathijs Schoffelen; Robert Oostenveld; Pascal Fries
Journal:  Neuroimage       Date:  2008-02-12       Impact factor: 6.556

9.  Neural discharge and local field potential oscillations in primate motor cortex during voluntary movements.

Authors:  J P Donoghue; J N Sanes; N G Hatsopoulos; G Gaál
Journal:  J Neurophysiol       Date:  1998-01       Impact factor: 2.714

10.  Origin of human motor readiness field linked to left middle frontal gyrus by MEG and PET.

Authors:  J R Pedersen; P Johannsen; C K Bak; B Kofoed; K Saermark; A Gjedde
Journal:  Neuroimage       Date:  1998-08       Impact factor: 6.556

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  173 in total

1.  Rich-Club Organization in Effective Connectivity among Cortical Neurons.

Authors:  Sunny Nigam; Masanori Shimono; Shinya Ito; Fang-Chin Yeh; Nicholas Timme; Maxym Myroshnychenko; Christopher C Lapish; Zachary Tosi; Pawel Hottowy; Wesley C Smith; Sotiris C Masmanidis; Alan M Litke; Olaf Sporns; John M Beggs
Journal:  J Neurosci       Date:  2016-01-20       Impact factor: 6.167

2.  The Identity of Information: How Deterministic Dependencies Constrain Information Synergy and Redundancy.

Authors:  Daniel Chicharro; Giuseppe Pica; Stefano Panzeri
Journal:  Entropy (Basel)       Date:  2018-03-05       Impact factor: 2.524

Review 3.  Synergy, redundancy, and multivariate information measures: an experimentalist's perspective.

Authors:  Nicholas Timme; Wesley Alford; Benjamin Flecker; John M Beggs
Journal:  J Comput Neurosci       Date:  2013-07-03       Impact factor: 1.621

4.  Exploring neural directed interactions with transfer entropy based on an adaptive kernel density estimator.

Authors:  K Zuo; J J Bellanger; C Yang; H Shu; R Le Bouquin Jeannés
Journal:  Conf Proc IEEE Eng Med Biol Soc       Date:  2013

Review 5.  A Tutorial for Information Theory in Neuroscience.

Authors:  Nicholas M Timme; Christopher Lapish
Journal:  eNeuro       Date:  2018-09-11

6.  Conditional Self-Entropy and Conditional Joint Transfer Entropy in Heart Period Variability during Graded Postural Challenge.

Authors:  Alberto Porta; Luca Faes; Giandomenico Nollo; Vlasta Bari; Andrea Marchi; Beatrice De Maria; Anielle C M Takahashi; Aparecida M Catai
Journal:  PLoS One       Date:  2015-07-15       Impact factor: 3.240

7.  Information theory in neuroscience.

Authors:  Alexander G Dimitrov; Aurel A Lazar; Jonathan D Victor
Journal:  J Comput Neurosci       Date:  2011-02       Impact factor: 1.621

8.  Clinical Personal Connectomics Using Hybrid PET/MRI.

Authors:  Dong Soo Lee
Journal:  Nucl Med Mol Imaging       Date:  2019-01-15

9.  Information-Theoretic Evidence for Predictive Coding in the Face-Processing System.

Authors:  Alla Brodski-Guerniero; Georg-Friedrich Paasch; Patricia Wollstadt; Ipek Özdemir; Joseph T Lizier; Michael Wibral
Journal:  J Neurosci       Date:  2017-07-27       Impact factor: 6.167

10.  Effect of age on complexity and causality of the cardiovascular control: comparison between model-based and model-free approaches.

Authors:  Alberto Porta; Luca Faes; Vlasta Bari; Andrea Marchi; Tito Bassani; Giandomenico Nollo; Natália Maria Perseguini; Juliana Milan; Vinícius Minatel; Audrey Borghi-Silva; Anielle C M Takahashi; Aparecida M Catai
Journal:  PLoS One       Date:  2014-02-24       Impact factor: 3.240

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