Literature DB >> 20701449

Chromatin conformation signatures: ideal human disease biomarkers?

Jennifer L Crutchley1, Xue Qing David Wang, Maria A Ferraiuolo, Josée Dostie.   

Abstract

Human health is related to information stored in our genetic code, which is highly variable even amongst healthy individuals. Gene expression is orchestrated by numerous control elements that may be located anywhere in the genome, and can regulate distal genes by physically interacting with them. These DNA contacts can be mapped with the chromosome conformation capture and related technologies. Several studies now demonstrate that gene expression patterns are associated with specific chromatin structures, and may therefore correlate with chromatin conformation signatures. Here, we present an overview of genome organization and its relationship with gene expression. We also summarize how chromatin conformation signatures can be identified and discuss why they might represent ideal biomarkers of human disease in such genetically diverse populations.

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Year:  2010        PMID: 20701449     DOI: 10.2217/bmm.10.68

Source DB:  PubMed          Journal:  Biomark Med        ISSN: 1752-0363            Impact factor:   2.851


  20 in total

Review 1.  DNA methylation topology: potential of a chromatin landmark for epigenetic drug toxicology.

Authors:  Jian Tajbakhsh
Journal:  Epigenomics       Date:  2011-12       Impact factor: 4.778

2.  A method for simultaneously delineating multiple targets in 3D-FISH using limited channels, lasers, and fluorochromes.

Authors:  F Y Zhao; X Yang; D Y Chen; W Y Ma; J G Zheng; X M Zhang
Journal:  Eur Biophys J       Date:  2013-12-04       Impact factor: 1.733

3.  Visualization of the spatial positioning of the SNRPN, UBE3A, and GABRB3 genes in the normal human nucleus by three-color 3D fluorescence in situ hybridization.

Authors:  Rie Kawamura; Hideyuki Tanabe; Takahito Wada; Shinji Saitoh; Yoshimitsu Fukushima; Keiko Wakui
Journal:  Chromosome Res       Date:  2012-07-17       Impact factor: 5.239

4.  Epigenetic regulation of retinal development and disease.

Authors:  Rajesh C Rao; Anne K Hennig; Muhammad T A Malik; Dong Feng Chen; Shiming Chen
Journal:  J Ocul Biol Dis Infor       Date:  2012-03-29

5.  Spatial Organization of Epigenomes.

Authors:  Jonathan Christopher Dubé; Xue Qing David Wang; Josée Dostie
Journal:  Curr Mol Biol Rep       Date:  2016-02-04

6.  Radicava/Edaravone Findings in Biomarkers From Amyotrophic Lateral Sclerosis (REFINE-ALS): Protocol and Study Design.

Authors:  James Berry; Benjamin Brooks; Angela Genge; Terry Heiman-Patterson; Stanley Appel; Michael Benatar; Robert Bowser; Merit Cudkowicz; Clifton Gooch; Jeremy Shefner; Jurjen Westra; Wendy Agnese; Charlotte Merrill; Sally Nelson; Stephen Apple
Journal:  Neurol Clin Pract       Date:  2021-08

7.  Characterization of GJB2 cis-regulatory elements in the DFNB1 locus.

Authors:  Stéphanie Moisan; Anaïs Le Nabec; Alicia Quillévéré; Cédric Le Maréchal; Claude Férec
Journal:  Hum Genet       Date:  2019-10-04       Impact factor: 4.132

8.  From cells to chromatin: capturing snapshots of genome organization with 5C technology.

Authors:  Maria A Ferraiuolo; Amartya Sanyal; Natalia Naumova; Job Dekker; Josée Dostie
Journal:  Methods       Date:  2012-11-05       Impact factor: 3.608

9.  Three-dimensional modeling of chromatin structure from interaction frequency data using Markov chain Monte Carlo sampling.

Authors:  Mathieu Rousseau; James Fraser; Maria A Ferraiuolo; Josée Dostie; Mathieu Blanchette
Journal:  BMC Bioinformatics       Date:  2011-10-25       Impact factor: 3.169

10.  Shaping the Genome with Non-Coding RNAs.

Authors:  Xue Q D Wang; Jennifer L Crutchley; Josée Dostie
Journal:  Curr Genomics       Date:  2011-08       Impact factor: 2.236

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