Literature DB >> 23538488

Epigenetic regulation of retinal development and disease.

Rajesh C Rao1, Anne K Hennig, Muhammad T A Malik, Dong Feng Chen, Shiming Chen.   

Abstract

Epigenetic regulation, including DNA methylation, histone modifications, and chromosomal organization, is emerging as a new layer of transcriptional regulation in retinal development and maintenance. Guided by intrinsic transcription factors and extrinsic signaling molecules, epigenetic regulation can activate and/or repress the expression of specific sets of genes, therefore playing an important role in retinal cell fate specification and terminal differentiation during development as well as maintaining cell function and survival in adults. Here, we review the major findings that have linked these mechanisms to the development and maintenance of retinal structure and function, with a focus on ganglion cells and photoreceptors. The mechanisms of epigenetic regulation are highly complex and vary among different cell types. Understanding the basic principles of these mechanisms and their regulatory pathways may provide new insight into the pathogenesis of retinal diseases associated with transcription dysregulation, and new therapeutic strategies for treatment.

Entities:  

Keywords:  Cell type-specific transcription; Chromatin modifications; Neuronal development and disease

Year:  2012        PMID: 23538488      PMCID: PMC3382290          DOI: 10.1007/s12177-012-9083-0

Source DB:  PubMed          Journal:  J Ocul Biol Dis Infor        ISSN: 1936-8437


  149 in total

1.  High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells.

Authors:  Alan P Boyle; Lingyun Song; Bum-Kyu Lee; Darin London; Damian Keefe; Ewan Birney; Vishwanath R Iyer; Gregory E Crawford; Terrence S Furey
Journal:  Genome Res       Date:  2010-11-24       Impact factor: 9.043

2.  Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

Authors:  Hélène Hagège; Petra Klous; Caroline Braem; Erik Splinter; Job Dekker; Guy Cathala; Wouter de Laat; Thierry Forné
Journal:  Nat Protoc       Date:  2007       Impact factor: 13.491

3.  BAP1: a novel ubiquitin hydrolase which binds to the BRCA1 RING finger and enhances BRCA1-mediated cell growth suppression.

Authors:  D E Jensen; M Proctor; S T Marquis; H P Gardner; S I Ha; L A Chodosh; A M Ishov; N Tommerup; H Vissing; Y Sekido; J Minna; A Borodovsky; D C Schultz; K D Wilkinson; G G Maul; N Barlev; S L Berger; G C Prendergast; F J Rauscher
Journal:  Oncogene       Date:  1998-03-05       Impact factor: 9.867

4.  Trimethylation of histone H3 lysine 4 by Set1 in the lytic infection of human herpes simplex virus 1.

Authors:  Jing Huang; Jennifer R Kent; Brandon Placek; Kelly A Whelan; Charles M Hollow; Ping-Yao Zeng; Nigel W Fraser; Shelley L Berger
Journal:  J Virol       Date:  2006-06       Impact factor: 5.103

5.  Aberrant demethylation of the recoverin gene is involved in the aberrant expression of recoverin in cancer cells.

Authors:  Alexandr V Bazhin; Charles De Smet; Marina O Golovastova; Jan Schmidt; Pavel P Philippov
Journal:  Exp Dermatol       Date:  2010-08-31       Impact factor: 3.960

6.  The nuclear deubiquitinase BAP1 is commonly inactivated by somatic mutations and 3p21.1 losses in malignant pleural mesothelioma.

Authors:  Matthew Bott; Marie Brevet; Barry S Taylor; Shigeki Shimizu; Tatsuo Ito; Lu Wang; Jenette Creaney; Richard A Lake; Maureen F Zakowski; Boris Reva; Chris Sander; Robert Delsite; Simon Powell; Qin Zhou; Ronglai Shen; Adam Olshen; Valerie Rusch; Marc Ladanyi
Journal:  Nat Genet       Date:  2011-06-05       Impact factor: 38.330

Review 7.  Mammalian sirtuins and energy metabolism.

Authors:  Xiaoling Li; Nevzat Kazgan
Journal:  Int J Biol Sci       Date:  2011-05-09       Impact factor: 6.580

8.  Germline BAP1 mutations predispose to malignant mesothelioma.

Authors:  Joseph R Testa; Mitchell Cheung; Jianming Pei; Jennifer E Below; Yinfei Tan; Eleonora Sementino; Nancy J Cox; A Umran Dogan; Harvey I Pass; Sandra Trusa; Mary Hesdorffer; Masaki Nasu; Amy Powers; Zeyana Rivera; Sabahattin Comertpay; Mika Tanji; Giovanni Gaudino; Haining Yang; Michele Carbone
Journal:  Nat Genet       Date:  2011-08-28       Impact factor: 38.330

9.  Chromatin conformation signatures of cellular differentiation.

Authors:  James Fraser; Mathieu Rousseau; Solomon Shenker; Maria A Ferraiuolo; Yoshihide Hayashizaki; Mathieu Blanchette; Josée Dostie
Journal:  Genome Biol       Date:  2009-04-19       Impact factor: 13.583

10.  Dynamics of Dnmt1 interaction with the replication machinery and its role in postreplicative maintenance of DNA methylation.

Authors:  Lothar Schermelleh; Andrea Haemmer; Fabio Spada; Nicole Rösing; Daniela Meilinger; Ulrich Rothbauer; M Cristina Cardoso; Heinrich Leonhardt
Journal:  Nucleic Acids Res       Date:  2007-06-18       Impact factor: 16.971

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1.  Samd7 is a cell type-specific PRC1 component essential for establishing retinal rod photoreceptor identity.

Authors:  Yoshihiro Omori; Shun Kubo; Tetsuo Kon; Mayu Furuhashi; Hirotaka Narita; Taro Kominami; Akiko Ueno; Ryotaro Tsutsumi; Taro Chaya; Haruka Yamamoto; Isao Suetake; Shinji Ueno; Haruhiko Koseki; Atsushi Nakagawa; Takahisa Furukawa
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-12       Impact factor: 11.205

2.  DNase I hypersensitivity analysis of the mouse brain and retina identifies region-specific regulatory elements.

Authors:  Matthew S Wilken; Joseph A Brzezinski; Anna La Torre; Kyle Siebenthall; Robert Thurman; Peter Sabo; Richard S Sandstrom; Jeff Vierstra; Theresa K Canfield; R Scott Hansen; Michael A Bender; John Stamatoyannopoulos; Thomas A Reh
Journal:  Epigenetics Chromatin       Date:  2015-02-28       Impact factor: 4.954

Review 3.  Epigenetics and Signaling Pathways in Glaucoma.

Authors:  Angela C Gauthier; Ji Liu
Journal:  Biomed Res Int       Date:  2017-01-22       Impact factor: 3.411

4.  An integrated transcriptional analysis of the developing human retina.

Authors:  Carla B Mellough; Roman Bauer; Joseph Collin; Birthe Dorgau; Darin Zerti; David W P Dolan; Carl M Jones; Osagie G Izuogu; Min Yu; Dean Hallam; Jannetta S Steyn; Kathryn White; David H Steel; Mauro Santibanez-Koref; David J Elliott; Michael S Jackson; Susan Lindsay; Sushma Grellscheid; Majlinda Lako
Journal:  Development       Date:  2019-01-29       Impact factor: 6.862

5.  Regulation of Opsin Gene Expression by DNA Methylation and Histone Acetylation.

Authors:  Jin Song; Julia A VanBuskirk; Shannath L Merbs
Journal:  Int J Mol Sci       Date:  2022-01-26       Impact factor: 5.923

6.  Characterization and pharmacologic targeting of EZH2, a fetal retinal protein and epigenetic regulator, in human retinoblastoma.

Authors:  Mehnaz Khan; Laura L Walters; Qiang Li; Dafydd G Thomas; Jason M L Miller; Qitao Zhang; Andrew P Sciallis; Yu Liu; Brian J Dlouhy; Patrice E Fort; Steven M Archer; Hakan Demirci; Yali Dou; Rajesh C Rao
Journal:  Lab Invest       Date:  2015-08-17       Impact factor: 5.662

7.  DZNep inhibits H3K27me3 deposition and delays retinal degeneration in the rd1 mice.

Authors:  Shijie Zheng; Lirong Xiao; Yu Liu; Yujiao Wang; Lin Cheng; Junjun Zhang; Naihong Yan; Danian Chen
Journal:  Cell Death Dis       Date:  2018-02-22       Impact factor: 8.469

  7 in total

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