Literature DB >> 20699206

A macro finite-element formulation for cardiac electrophysiology simulations using hybrid unstructured grids.

Bernardo M Rocha1, Ferdinand Kickinger, Anton J Prassl, Gundolf Haase, Edward J Vigmond, Rodrigo Weber dos Santos, Sabine Zaglmayr, Gernot Plank.   

Abstract

Electrical activity in cardiac tissue can be described by the bidomain equations whose solution for large-scale simulations still remains a computational challenge. Therefore, improvements in the discrete formulation of the problem, which decrease computational and/or memory demands are highly desirable. In this study, we propose a novel technique for computing shape functions of finite elements (FEs). The technique generates macro FEs (MFEs) based on the local decomposition of elements into tetrahedral subelements with linear shape functions. Such an approach necessitates the direct use of hybrid meshes (HMs) composed of different types of elements. MFEs are compared to classic standard FEs with respect to accuracy and RAM memory usage under different scenarios of cardiac modeling, including bidomain and monodomain simulations in 2-D and 3-D for simple and complex tissue geometries. In problems with analytical solutions, MFEs displayed the same numerical accuracy of standard linear triangular and tetrahedral elements. In propagation simulations, conduction velocity and activation times agreed very well with those computed with standard FEs. However, MFEs offer a significant decrease in memory requirements. We conclude that HMs composed of MFEs are well suited for solving problems in cardiac computational electrophysiology.

Entities:  

Mesh:

Year:  2010        PMID: 20699206      PMCID: PMC3223405          DOI: 10.1109/TBME.2010.2064167

Source DB:  PubMed          Journal:  IEEE Trans Biomed Eng        ISSN: 0018-9294            Impact factor:   4.538


  29 in total

1.  An operator splitting method for solving the bidomain equations coupled to a volume conductor model for the torso.

Authors:  Joakim Sundnes; Glenn Terje Lines; Aslak Tveito
Journal:  Math Biosci       Date:  2005-04       Impact factor: 2.144

2.  On the computational complexity of the bidomain and the monodomain models of electrophysiology.

Authors:  Joakim Sundnes; Bjørn Fredrik Nielsen; Kent Andre Mardal; Xing Cai; Glenn Terje Lines; Aslak Tveito
Journal:  Ann Biomed Eng       Date:  2006-05-16       Impact factor: 3.934

3.  A comparison of monodomain and bidomain reaction-diffusion models for action potential propagation in the human heart.

Authors:  Mark Potse; Bruno Dubé; Jacques Richer; Alain Vinet; Ramesh M Gulrajani
Journal:  IEEE Trans Biomed Eng       Date:  2006-12       Impact factor: 4.538

4.  Three-dimensional models of individual cardiac histoanatomy: tools and challenges.

Authors:  Rebecca A B Burton; Gernot Plank; Jürgen E Schneider; Vicente Grau; Helmut Ahammer; Stephen L Keeling; Jack Lee; Nicolas P Smith; David Gavaghan; Natalia Trayanova; Peter Kohl
Journal:  Ann N Y Acad Sci       Date:  2006-10       Impact factor: 5.691

5.  Laminar arrangement of ventricular myocytes influences electrical behavior of the heart.

Authors:  Darren A Hooks; Mark L Trew; Bryan J Caldwell; Gregory B Sands; Ian J LeGrice; Bruce H Smaill
Journal:  Circ Res       Date:  2007-10-18       Impact factor: 17.367

6.  Tunnel propagation of postshock activations as a hypothesis for fibrillation induction and isoelectric window.

Authors:  Takashi Ashihara; Jason Constantino; Natalia A Trayanova
Journal:  Circ Res       Date:  2008-01-24       Impact factor: 17.367

7.  A rabbit ventricular action potential model replicating cardiac dynamics at rapid heart rates.

Authors:  Aman Mahajan; Yohannes Shiferaw; Daisuke Sato; Ali Baher; Riccardo Olcese; Lai-Hua Xie; Ming-Jim Yang; Peng-Sheng Chen; Juan G Restrepo; Alain Karma; Alan Garfinkel; Zhilin Qu; James N Weiss
Journal:  Biophys J       Date:  2008-01-15       Impact factor: 4.033

8.  Proarrhythmic consequences of a KCNQ1 AKAP-binding domain mutation: computational models of whole cells and heterogeneous tissue.

Authors:  Jeffrey J Saucerman; Sarah N Healy; Mary E Belik; Jose L Puglisi; Andrew D McCulloch
Journal:  Circ Res       Date:  2004-11-04       Impact factor: 17.367

9.  Organization of ventricular fibrillation in the human heart.

Authors:  Kirsten H W J Ten Tusscher; Rok Hren; Alexander V Panfilov
Journal:  Circ Res       Date:  2007-05-31       Impact factor: 17.367

10.  Algebraic multigrid preconditioner for the cardiac bidomain model.

Authors:  Gernot Plank; Manfred Liebmann; Rodrigo Weber dos Santos; Edward J Vigmond; Gundolf Haase
Journal:  IEEE Trans Biomed Eng       Date:  2007-04       Impact factor: 4.538

View more
  13 in total

Review 1.  Modeling defibrillation of the heart: approaches and insights.

Authors:  Natalia Trayanova; Jason Constantino; Takashi Ashihara; Gernot Plank
Journal:  IEEE Rev Biomed Eng       Date:  2011

2.  Accelerating cardiac bidomain simulations using graphics processing units.

Authors:  A Neic; M Liebmann; E Hoetzl; L Mitchell; E J Vigmond; G Haase; G Plank
Journal:  IEEE Trans Biomed Eng       Date:  2012-06-05       Impact factor: 4.538

Review 3.  Computational approaches to understand cardiac electrophysiology and arrhythmias.

Authors:  Byron N Roberts; Pei-Chi Yang; Steven B Behrens; Jonathan D Moreno; Colleen E Clancy
Journal:  Am J Physiol Heart Circ Physiol       Date:  2012-08-10       Impact factor: 4.733

4.  Modeling the dispersion in electromechanically coupled myocardium.

Authors:  Thomas S E Eriksson; Anton J Prassl; Gernot Plank; Gerhard A Holzapfel
Journal:  Int J Numer Method Biomed Eng       Date:  2013-07-19       Impact factor: 2.747

5.  Electroanatomical characterization of atrial microfibrosis in a histologically detailed computer model.

Authors:  Fernando O Campos; Thomas Wiener; Anton J Prassl; Rodrigo Weber dos Santos; Damian Sanchez-Quintana; Helmut Ahammer; Gernot Plank; Ernst Hofer
Journal:  IEEE Trans Biomed Eng       Date:  2013-04-03       Impact factor: 4.538

6.  Towards a Computational Framework for Modeling the Impact of Aortic Coarctations Upon Left Ventricular Load.

Authors:  Elias Karabelas; Matthias A F Gsell; Christoph M Augustin; Laura Marx; Aurel Neic; Anton J Prassl; Leonid Goubergrits; Titus Kuehne; Gernot Plank
Journal:  Front Physiol       Date:  2018-05-28       Impact factor: 4.566

7.  Decomposition of fractionated local electrograms using an analytic signal model based on sigmoid functions.

Authors:  Thomas Wiener; Fernando O Campos; Gernot Plank; Ernst Hofer
Journal:  Biomed Tech (Berl)       Date:  2012-10       Impact factor: 1.411

8.  Toward GPGPU accelerated human electromechanical cardiac simulations.

Authors:  Guillermo Vigueras; Ishani Roy; Andrew Cookson; Jack Lee; Nicolas Smith; David Nordsletten
Journal:  Int J Numer Method Biomed Eng       Date:  2013-09-20       Impact factor: 2.747

9.  Anatomically accurate high resolution modeling of human whole heart electromechanics: A strongly scalable algebraic multigrid solver method for nonlinear deformation.

Authors:  Christoph M Augustin; Aurel Neic; Manfred Liebmann; Anton J Prassl; Steven A Niederer; Gundolf Haase; Gernot Plank
Journal:  J Comput Phys       Date:  2016-01-15       Impact factor: 3.553

10.  Tachycardia in post-infarction hearts: insights from 3D image-based ventricular models.

Authors:  Hermenegild Arevalo; Gernot Plank; Patrick Helm; Henry Halperin; Natalia Trayanova
Journal:  PLoS One       Date:  2013-07-02       Impact factor: 3.240

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.