Literature DB >> 20693689

Quantitive evaluation of macromolecular crystallization experiments using 1,8-ANS fluorescence.

David Watts1, Jochen Müller-Dieckmann, Gohar Tsakanova, Victor S Lamzin, Matthew R Groves.   

Abstract

Modern X-ray structure analysis and advances in high-throughput robotics have allowed a significant increase in the number of conditions screened for a given sample volume. An efficient evaluation of the increased amount of crystallization trials in order to identify successful experiments is now urgently required. A novel approach is presented for the visualization of crystallization experiments using fluorescence from trace amounts of a nonspecific dye. The fluorescence images obtained strongly contrast protein crystals against other phenomena, such as precipitation and phase separation. Novel software has been developed to quantitatively evaluate the crystallization outcome based on a biophysical metric correlated with voxel protein concentration. In >1500 trials, 85.6% of the successful crystallization experiments were correctly identified, yielding a 50% reduction in the number of 'missed hits' compared with current automated approaches. The use of the method in the crystallization of three previously uncharacterized proteins from the malarial parasite Plasmodium falciparum is further demonstrated.

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Year:  2010        PMID: 20693689     DOI: 10.1107/S0907444910020664

Source DB:  PubMed          Journal:  Acta Crystallogr D Biol Crystallogr        ISSN: 0907-4449


  7 in total

1.  Crystallization and preliminary X-ray diffraction of malate dehydrogenase from Plasmodium falciparum.

Authors:  Carsten Wrenger; Ingrid B Müller; Sabine Butzloff; Rositsa Jordanova; Sergey Lunev; Matthew R Groves
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-05-23

2.  Automation in biological crystallization.

Authors:  Patrick Shaw Stewart; Jochen Mueller-Dieckmann
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-05-28       Impact factor: 1.056

3.  A visible-light-excited fluorescence method for imaging protein crystals without added dyes.

Authors:  Tiit Lukk; Richard E Gillilan; Doletha M E Szebenyi; Warren R Zipfel
Journal:  J Appl Crystallogr       Date:  2016-02-01       Impact factor: 3.304

Review 4.  Latest methods of fluorescence-based protein crystal identification.

Authors:  Arne Meyer; Christian Betzel; Marc Pusey
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-01-28       Impact factor: 1.056

Review 5.  An overview of biological macromolecule crystallization.

Authors:  Irene Russo Krauss; Antonello Merlino; Alessandro Vergara; Filomena Sica
Journal:  Int J Mol Sci       Date:  2013-05-31       Impact factor: 5.923

6.  Identifying, studying and making good use of macromolecular crystals.

Authors:  Guillermo Calero; Aina E Cohen; Joseph R Luft; Janet Newman; Edward H Snell
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-07-25       Impact factor: 1.056

7.  A low-cost method for visible fluorescence imaging.

Authors:  Crissy L Tarver; Marc Pusey
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2017-11-10       Impact factor: 1.056

  7 in total

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