Literature DB >> 20693675

Overexpression, crystallization and preliminary X-ray analysis of xylulose-5-phosphate/fructose-6-phosphate phosphoketolase from Bifidobacterium breve.

Ryuichiro Suzuki1, Byung-Jun Kim, Tsuyoshi Shibata, Yuki Iwamoto, Takane Katayama, Hisashi Ashida, Takayoshi Wakagi, Hirofumi Shoun, Shinya Fushinobu, Kenji Yamamoto.   

Abstract

The xylulose-5-phosphate/fructose-6-phosphate phosphoketolase gene from Bifidobacterium breve was cloned and overexpressed in Escherichia coli. The enzyme was purified to homogeneity and crystallized by the sitting-drop vapour-diffusion method. Crystals were obtained at 293 K using 0.05 mM thiamine diphosphate, 0.25 mM MgCl2, 24%(w/v) PEG 6000 and 0.1 M Bicine pH 9.0. The crystals belonged to the tetragonal space group I422, with unit-cell parameters a=b=174.8, c=163.8 A, and diffracted to beyond 1.7 A resolution.

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Year:  2010        PMID: 20693675      PMCID: PMC2917298          DOI: 10.1107/S1744309110023845

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  19 in total

1.  Formation and isolation of a glycoladehyde-phosphoketolase intermediate.

Authors:  M L GOLDBERG; E RACKER
Journal:  J Biol Chem       Date:  1962-12       Impact factor: 5.157

2.  Phosphorolytic cleavage of fructose-6-phosphate by fructose-6-phosphate phosphoketolase from Acetobacter xylinum.

Authors:  M SCHRAMM; V KLYBAS; E RACKER
Journal:  J Biol Chem       Date:  1958-12       Impact factor: 5.157

3.  Pentose fermentation by Lactobacillus plantarum. I. The cleavage of xylulose 5-phosphate by phosphoketolase.

Authors:  E C HEATH; J HURWITZ; B L HORECKER; A GINSBURG
Journal:  J Biol Chem       Date:  1958-04       Impact factor: 5.157

4.  Pentose phosphate cleavage by Leuconostoc mesenteroides.

Authors:  J HURWITZ
Journal:  Biochim Biophys Acta       Date:  1958-06

5.  Characterization of the D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase gene (xfp) from Bifidobacterium lactis.

Authors:  L Meile; L M Rohr; T A Geissmann; M Herensperger; M Teuber
Journal:  J Bacteriol       Date:  2001-05       Impact factor: 3.490

6.  Purification and properties of two fructose-6-phosphate phosphoketolases in Bifidobacterium.

Authors:  B Sgorbati; G Lenaz; F Casalicchio
Journal:  Antonie Van Leeuwenhoek       Date:  1976       Impact factor: 2.271

7.  Purification and characterization of beta-D-glucosidase (beta-D-fucosidase) from Bifidobacterium breve clb acclimated to cellobiose.

Authors:  N Nunoura; K Ohdan; T Yano; K Yamamoto; H Kumagai
Journal:  Biosci Biotechnol Biochem       Date:  1996-02       Impact factor: 2.043

8.  Characterization of fructose 6 phosphate phosphoketolases purified from Bifidobacterium species.

Authors:  J P Grill; J Crociani; J Ballongue
Journal:  Curr Microbiol       Date:  1995-07       Impact factor: 2.188

9.  Cloning, expression, purification, cofactor requirements, and steady state kinetics of phosphoketolase-2 from Lactobacillus plantarum.

Authors:  Alejandro Yevenes; Perry A Frey
Journal:  Bioorg Chem       Date:  2008-04-21       Impact factor: 5.275

10.  Three-dimensional structure of transketolase, a thiamine diphosphate dependent enzyme, at 2.5 A resolution.

Authors:  Y Lindqvist; G Schneider; U Ermler; M Sundström
Journal:  EMBO J       Date:  1992-07       Impact factor: 11.598

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  4 in total

1.  Crystal structures of phosphoketolase: thiamine diphosphate-dependent dehydration mechanism.

Authors:  Ryuichiro Suzuki; Takane Katayama; Byung-Jun Kim; Takayoshi Wakagi; Hirofumi Shoun; Hisashi Ashida; Kenji Yamamoto; Shinya Fushinobu
Journal:  J Biol Chem       Date:  2010-08-24       Impact factor: 5.157

Review 2.  Structure and evolution of the bifidobacterial carbohydrate metabolism proteins and enzymes.

Authors:  Shinya Fushinobu; Maher Abou Hachem
Journal:  Biochem Soc Trans       Date:  2021-04-30       Impact factor: 5.407

3.  Genetic and nutrient modulation of acetyl-CoA levels in Synechocystis for n-butanol production.

Authors:  Josefine Anfelt; Danuta Kaczmarzyk; Kiyan Shabestary; Björn Renberg; Johan Rockberg; Jens Nielsen; Mathias Uhlén; Elton P Hudson
Journal:  Microb Cell Fact       Date:  2015-10-16       Impact factor: 5.328

4.  Functional expression and evaluation of heterologous phosphoketolases in Saccharomyces cerevisiae.

Authors:  Alexandra Bergman; Verena Siewers; Jens Nielsen; Yun Chen
Journal:  AMB Express       Date:  2016-11-15       Impact factor: 3.298

  4 in total

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