Literature DB >> 20686567

The Amphimedon queenslandica genome and the evolution of animal complexity.

Mansi Srivastava1, Oleg Simakov, Jarrod Chapman, Bryony Fahey, Marie E A Gauthier, Therese Mitros, Gemma S Richards, Cecilia Conaco, Michael Dacre, Uffe Hellsten, Claire Larroux, Nicholas H Putnam, Mario Stanke, Maja Adamska, Aaron Darling, Sandie M Degnan, Todd H Oakley, David C Plachetzki, Yufeng Zhai, Marcin Adamski, Andrew Calcino, Scott F Cummins, David M Goodstein, Christina Harris, Daniel J Jackson, Sally P Leys, Shengqiang Shu, Ben J Woodcroft, Michel Vervoort, Kenneth S Kosik, Gerard Manning, Bernard M Degnan, Daniel S Rokhsar.   

Abstract

Sponges are an ancient group of animals that diverged from other metazoans over 600 million years ago. Here we present the draft genome sequence of Amphimedon queenslandica, a demosponge from the Great Barrier Reef, and show that it is remarkably similar to other animal genomes in content, structure and organization. Comparative analysis enabled by the sequencing of the sponge genome reveals genomic events linked to the origin and early evolution of animals, including the appearance, expansion and diversification of pan-metazoan transcription factor, signalling pathway and structural genes. This diverse 'toolkit' of genes correlates with critical aspects of all metazoan body plans, and comprises cell cycle control and growth, development, somatic- and germ-cell specification, cell adhesion, innate immunity and allorecognition. Notably, many of the genes associated with the emergence of animals are also implicated in cancer, which arises from defects in basic processes associated with metazoan multicellularity.

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Year:  2010        PMID: 20686567      PMCID: PMC3130542          DOI: 10.1038/nature09201

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  59 in total

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2.  Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis.

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Journal:  Mol Biol Evol       Date:  2000-04       Impact factor: 16.240

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Journal:  Gene       Date:  2001-12-12       Impact factor: 3.688

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Journal:  Nature       Date:  2008-03-05       Impact factor: 49.962

6.  The premetazoan ancestry of cadherins.

Authors:  Monika Abedin; Nicole King
Journal:  Science       Date:  2008-02-15       Impact factor: 47.728

7.  Improved phylogenomic taxon sampling noticeably affects nonbilaterian relationships.

Authors:  K S Pick; H Philippe; F Schreiber; D Erpenbeck; D J Jackson; P Wrede; M Wiens; A Alié; B Morgenstern; M Manuel; G Wörheide
Journal:  Mol Biol Evol       Date:  2010-04-08       Impact factor: 16.240

8.  The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans.

Authors:  Nicole King; M Jody Westbrook; Susan L Young; Alan Kuo; Monika Abedin; Jarrod Chapman; Stephen Fairclough; Uffe Hellsten; Yoh Isogai; Ivica Letunic; Michael Marr; David Pincus; Nicholas Putnam; Antonis Rokas; Kevin J Wright; Richard Zuzow; William Dirks; Matthew Good; David Goodstein; Derek Lemons; Wanqing Li; Jessica B Lyons; Andrea Morris; Scott Nichols; Daniel J Richter; Asaf Salamov; J G I Sequencing; Peer Bork; Wendell A Lim; Gerard Manning; W Todd Miller; William McGinnis; Harris Shapiro; Robert Tjian; Igor V Grigoriev; Daniel Rokhsar
Journal:  Nature       Date:  2008-02-14       Impact factor: 49.962

9.  The Trichoplax genome and the nature of placozoans.

Authors:  Mansi Srivastava; Emina Begovic; Jarrod Chapman; Nicholas H Putnam; Uffe Hellsten; Takeshi Kawashima; Alan Kuo; Therese Mitros; Asaf Salamov; Meredith L Carpenter; Ana Y Signorovitch; Maria A Moreno; Kai Kamm; Jane Grimwood; Jeremy Schmutz; Harris Shapiro; Igor V Grigoriev; Leo W Buss; Bernd Schierwater; Stephen L Dellaporta; Daniel S Rokhsar
Journal:  Nature       Date:  2008-08-21       Impact factor: 49.962

10.  PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification.

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Journal:  Nucleic Acids Res       Date:  2003-01-01       Impact factor: 16.971

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  407 in total

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Journal:  Dev Cell       Date:  2012-01-19       Impact factor: 12.270

Review 3.  Cellular and molecular processes leading to embryo formation in sponges: evidences for high conservation of processes throughout animal evolution.

Authors:  Alexander V Ereskovsky; Emmanuelle Renard; Carole Borchiellini
Journal:  Dev Genes Evol       Date:  2012-04-29       Impact factor: 0.900

4.  The evolution of an ancient metazoan biomineralization strategy was supported by a horizontal gene transfer.

Authors:  Daniel J Jackson
Journal:  Mob Genet Elements       Date:  2011-09-01

5.  "Hypothesis for the modern RNA world": a pervasive non-coding RNA-based genetic regulation is a prerequisite for the emergence of multicellular complexity.

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Journal:  Orig Life Evol Biosph       Date:  2012-02-10       Impact factor: 1.950

6.  Evolution of sodium channels and the new view of early nervous system evolution.

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Journal:  Commun Integr Biol       Date:  2011-11-01

7.  Complex structures - smart solutions: Formation of siliceous spicules.

Authors:  Xiaohong Wang; Werner E G Müller
Journal:  Commun Integr Biol       Date:  2011-11-01

8.  Blue-light-receptive cryptochrome is expressed in a sponge eye lacking neurons and opsin.

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Journal:  J Exp Biol       Date:  2012-04-15       Impact factor: 3.312

9.  A genomewide survey of bHLH transcription factors in the coral Acropora digitifera identifies three novel orthologous families, pearl, amber, and peridot.

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Journal:  Dev Genes Evol       Date:  2012-03-15       Impact factor: 0.900

Review 10.  The cell biology of schistosomes: a window on the evolution of the early metazoa.

Authors:  R Alan Wilson
Journal:  Protoplasma       Date:  2012-07       Impact factor: 3.356

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