Literature DB >> 20680839

A rapid and general assay for monitoring endogenous gene modification.

Dmitry Y Guschin1, Adam J Waite, George E Katibah, Jeffrey C Miller, Michael C Holmes, Edward J Rebar.   

Abstract

The development of zinc finger nucleases for targeted gene modification can benefit from rapid functional assays that directly quantify activity at the endogenous target. Here we describe a simple procedure for quantifying mutations that result from DNA double-strand break repair via non-homologous end joining. The assay is based on the ability of the Surveyor nuclease to selectively cleave distorted duplex DNA formed via cross-annealing of mutated and wild-type sequence.

Mesh:

Substances:

Year:  2010        PMID: 20680839     DOI: 10.1007/978-1-60761-753-2_15

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  262 in total

1.  Creating cancer translocations in human cells using Cas9 DSBs and nCas9 paired nicks.

Authors:  Benjamin Renouf; Marion Piganeau; Hind Ghezraoui; Maria Jasin; Erika Brunet
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

2.  Cas9-based genome editing in Xenopus tropicalis.

Authors:  Takuya Nakayama; Ira L Blitz; Margaret B Fish; Akinleye O Odeleye; Sumanth Manohar; Ken W Y Cho; Robert M Grainger
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

3.  Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures.

Authors:  Yannick Doyon; Thuy D Vo; Matthew C Mendel; Shon G Greenberg; Jianbin Wang; Danny F Xia; Jeffrey C Miller; Fyodor D Urnov; Philip D Gregory; Michael C Holmes
Journal:  Nat Methods       Date:  2010-12-05       Impact factor: 28.547

4.  Efficient delivery of nuclease proteins for genome editing in human stem cells and primary cells.

Authors:  Jia Liu; Thomas Gaj; Yifeng Yang; Nan Wang; Sailan Shui; Sojung Kim; Chidananda Nagamangala Kanchiswamy; Jin-Soo Kim; Carlos F Barbas
Journal:  Nat Protoc       Date:  2015-10-22       Impact factor: 13.491

5.  Quantifying genome-editing outcomes at endogenous loci with SMRT sequencing.

Authors:  Ayal Hendel; Eric J Kildebeck; Eli J Fine; Joseph Clark; Niraj Punjya; Vittorio Sebastiano; Gang Bao; Matthew H Porteus
Journal:  Cell Rep       Date:  2014-03-27       Impact factor: 9.423

6.  One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering.

Authors:  Hui Yang; Haoyi Wang; Chikdu S Shivalila; Albert W Cheng; Linyu Shi; Rudolf Jaenisch
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

7.  In Vivo Zinc Finger Nuclease-mediated Targeted Integration of a Glucose-6-phosphatase Transgene Promotes Survival in Mice With Glycogen Storage Disease Type IA.

Authors:  Dustin J Landau; Elizabeth Drake Brooks; Pablo Perez-Pinera; Hiruni Amarasekara; Adam Mefferd; Songtao Li; Andrew Bird; Charles A Gersbach; Dwight D Koeberl
Journal:  Mol Ther       Date:  2016-02-11       Impact factor: 11.454

8.  Zinc-finger nuclease editing of human cxcr4 promotes HIV-1 CD4(+) T cell resistance and enrichment.

Authors:  Jinyun Yuan; Jianbin Wang; Karen Crain; Colleen Fearns; Kenneth A Kim; Kevin L Hua; Philip D Gregory; Michael C Holmes; Bruce E Torbett
Journal:  Mol Ther       Date:  2012-01-24       Impact factor: 11.454

9.  TALEN-mediated gene targeting in porcine spermatogonia.

Authors:  Lin Tang; Alla Bondareva; Raquel González; Jose R Rodriguez-Sosa; Daniel F Carlson; Dennis Webster; Scott Fahrenkrug; Ina Dobrinski
Journal:  Mol Reprod Dev       Date:  2018-02-22       Impact factor: 2.609

10.  Genetic interaction mapping and exon-resolution functional genomics with a hybrid Cas9-Cas12a platform.

Authors:  Thomas Gonatopoulos-Pournatzis; Michael Aregger; Kevin R Brown; Shaghayegh Farhangmehr; Ulrich Braunschweig; Henry N Ward; Kevin C H Ha; Alexander Weiss; Maximilian Billmann; Tanja Durbic; Chad L Myers; Benjamin J Blencowe; Jason Moffat
Journal:  Nat Biotechnol       Date:  2020-03-16       Impact factor: 54.908

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.