Literature DB >> 20677765

Quantitative characterization of polymer-polymer, protein-protein, and polymer-protein interaction via tracer sedimentation equilibrium.

Adedayo A Fodeke1, Allen P Minton.   

Abstract

Quantitative analysis of the composition dependence of the concentration gradient of each species of macromolecule within a solution mixture at sedimentation equilibrium permits the quantitative characterization of self- and heterointeractions between sedimenting solutes. Sedimentation equilibrium experiments were conducted on solutions containing a trace concentration of FITC-labeled BSA in varying concentrations of Ficoll 70 and on solutions containing a trace concentration of FITC-labeled Ficoll 70 in varying concentrations of BSA. The equilibrium gradient of each solute component in each mixture was measured independently. Analysis of the resulting gradients resulted in evaluation of the dependence of the activity coefficient of Ficoll upon the concentrations of Ficoll and BSA at concentrations of up to 100 g/L and the dependence of the activity coefficient of BSA upon the concentrations of Ficoll and BSA at concentrations of up to 100 g/L. The activity coefficients of both species increase significantly with increasing Ficoll and BSA concentration and do not vary with temperature, to within the precision of measurement, over the temperature range of 5-37 degrees C, indicating that the dominant interaction between Ficoll molecules and between BSA and Ficoll molecules is repulsive and probably due to steric volume exclusion. The measured dependences may be accounted for quantitatively by a simple model in which BSA and Ficoll 70 are represented by equivalent rigid particles.

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Year:  2010        PMID: 20677765      PMCID: PMC3488767          DOI: 10.1021/jp104342f

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  14 in total

1.  The conformation of serum albumin in solution: a combined phosphorescence depolarization-hydrodynamic modeling study.

Authors:  M L Ferrer; R Duchowicz; B Carrasco; J G de la Torre; A U Acuña
Journal:  Biophys J       Date:  2001-05       Impact factor: 4.033

2.  Direct observation of the self-association of dilute proteins in the presence of inert macromolecules at high concentration via tracer sedimentation equilibrium: theory, experiment, and biological significance.

Authors:  G Rivas; J A Fernandez; A P Minton
Journal:  Biochemistry       Date:  1999-07-20       Impact factor: 3.162

3.  The effective hard particle model provides a simple, robust, and broadly applicable description of nonideal behavior in concentrated solutions of bovine serum albumin and other nonassociating proteins.

Authors:  Allen P Minton
Journal:  J Pharm Sci       Date:  2007-12       Impact factor: 3.534

4.  Static light scattering from concentrated protein solutions, I: General theory for protein mixtures and application to self-associating proteins.

Authors:  Allen P Minton
Journal:  Biophys J       Date:  2007-05-25       Impact factor: 4.033

5.  Effective hard particle model for the osmotic pressure of highly concentrated binary protein solutions.

Authors:  Allen P Minton
Journal:  Biophys J       Date:  2008-01-22       Impact factor: 4.033

6.  Static light scattering from concentrated protein solutions II: experimental test of theory for protein mixtures and weakly self-associating proteins.

Authors:  Cristina Fernández; Allen P Minton
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

Review 7.  Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences.

Authors:  Huan-Xiang Zhou; Germán Rivas; Allen P Minton
Journal:  Annu Rev Biophys       Date:  2008       Impact factor: 12.981

8.  Size and conformation of Ficoll as determined by size-exclusion chromatography followed by multiangle light scattering.

Authors:  William H Fissell; Christina L Hofmann; Ross Smith; Michelle H Chen
Journal:  Am J Physiol Renal Physiol       Date:  2009-10-21

Review 9.  Molecular crowding: analysis of effects of high concentrations of inert cosolutes on biochemical equilibria and rates in terms of volume exclusion.

Authors:  A P Minton
Journal:  Methods Enzymol       Date:  1998       Impact factor: 1.600

10.  Glomerular sieving of three neutral polysaccharides, polyethylene oxide and bikunin in rat. Effects of molecular size and conformation.

Authors:  D Asgeirsson; D Venturoli; E Fries; B Rippe; C Rippe
Journal:  Acta Physiol (Oxf)       Date:  2007-11       Impact factor: 6.311

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  16 in total

1.  Quantification of excluded volume effects on the folding landscape of Pseudomonas aeruginosa apoazurin in vitro.

Authors:  Alexander Christiansen; Pernilla Wittung-Stafshede
Journal:  Biophys J       Date:  2013-10-01       Impact factor: 4.033

2.  Effects of macromolecular crowding on the inhibition of virus assembly and virus-cell receptor recognition.

Authors:  Verónica Rincón; Rebeca Bocanegra; Alicia Rodríguez-Huete; Germán Rivas; Mauricio G Mateu
Journal:  Biophys J       Date:  2011-02-02       Impact factor: 4.033

Review 3.  Macromolecular interactions of the bacterial division FtsZ protein: from quantitative biochemistry and crowding to reconstructing minimal divisomes in the test tube.

Authors:  Germán Rivas; Carlos Alfonso; Mercedes Jiménez; Begoña Monterroso; Silvia Zorrilla
Journal:  Biophys Rev       Date:  2013-04-16

4.  Quantitative assessment of the relative contributions of steric repulsion and chemical interactions to macromolecular crowding.

Authors:  Allen P Minton
Journal:  Biopolymers       Date:  2013-04       Impact factor: 2.505

5.  Association equilibrium of the HIV-1 capsid protein in a crowded medium reveals that hexamerization during capsid assembly requires a functional C-domain dimerization interface.

Authors:  Rebeca Bocanegra; Carlos Alfonso; Alicia Rodríguez-Huete; Miguel Ángel Fuertes; Mercedes Jiménez; Germán Rivas; Mauricio G Mateu
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

6.  Crowding activates ClpB and enhances its association with DnaK for efficient protein aggregate reactivation.

Authors:  Ianire Martín; Garbiñe Celaya; Carlos Alfonso; Fernando Moro; Germán Rivas; Arturo Muga
Journal:  Biophys J       Date:  2014-05-06       Impact factor: 4.033

Review 7.  Toward an understanding of biochemical equilibria within living cells.

Authors:  Germán Rivas; Allen P Minton
Journal:  Biophys Rev       Date:  2017-12-12

8.  Effect of nonadditive repulsive intermolecular interactions on the light scattering of concentrated protein-osmolyte mixtures.

Authors:  Cristina Fernández; Allen P Minton
Journal:  J Phys Chem B       Date:  2010-12-22       Impact factor: 2.991

9.  Quantitative characterization of the concentration-dependent interaction between molecules of Dextran 70 in aqueous solution: Measurement and analysis in the context of thermodynamic and compressible sphere models.

Authors:  Cristina Fernández; Adedayo A Fodeke; Allen P Minton
Journal:  Biopolymers       Date:  2019-05-06       Impact factor: 2.505

Review 10.  Macromolecular Crowding In Vitro, In Vivo, and In Between.

Authors:  Germán Rivas; Allen P Minton
Journal:  Trends Biochem Sci       Date:  2016-09-23       Impact factor: 13.807

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