Literature DB >> 20676723

Long-range interactions and wave patterns in a DNA model.

C B Tabi1, A Mohamadou, T C Kofané.   

Abstract

We propose a spin-like model of DNA nonlinear dynamics with long-range interactions between adjacent base pairs. We show that the model equation is a modified sine-Gordon equation. We perform the linear stability analysis of a plane wave, which predicts high-amplitude and extended oscillating waves for high values of the long-range parameter. This is confirmed numerically and biological implications of the obtained patterns are suggested.

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Year:  2010        PMID: 20676723     DOI: 10.1140/epje/i2010-10627-x

Source DB:  PubMed          Journal:  Eur Phys J E Soft Matter        ISSN: 1292-8941            Impact factor:   1.890


  5 in total

1.  Direct measurement of the intermolecular forces between counterion-condensed DNA double helices. Evidence for long range attractive hydration forces.

Authors:  D C Rau; V A Parsegian
Journal:  Biophys J       Date:  1992-01       Impact factor: 4.033

2.  Solitonlike base pair opening in a helicoidal DNA: an analogy with a helimagnet and a cholesteric liquid crystal.

Authors:  M Daniel; V Vasumathi
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-01-20

3.  Discrete instability in the DNA double helix.

Authors:  Conrad Bertrand Tabi; Alidou Mohamadou; Timoléon Crépin Kofané
Journal:  Chaos       Date:  2009-12       Impact factor: 3.642

4.  Analysis of accordion DNA stretching revealed by the gold cluster ruler.

Authors:  Alexey K Mazur
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2009-07-02

5.  Nature of the open state in long polynucleotide double helices: possibility of soliton excitations.

Authors:  S W Englander; N R Kallenbach; A J Heeger; J A Krumhansl; S Litwin
Journal:  Proc Natl Acad Sci U S A       Date:  1980-12       Impact factor: 11.205

  5 in total
  2 in total

1.  Biological physics in México: Review and new challenges.

Authors:  Enrique Hernández-Lemus
Journal:  J Biol Phys       Date:  2011-02-11       Impact factor: 1.365

2.  Energy patterns in twist-opening models of DNA with solvent interactions.

Authors:  Conrad Bertrand Tabi; Grégoire Bineli; Alidou Mohamadou
Journal:  J Biol Phys       Date:  2015-06-09       Impact factor: 1.365

  2 in total

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