Literature DB >> 20675586

Ribosomal protein L7Ae is a subunit of archaeal RNase P.

I-Ming Cho1, Lien B Lai, Dwi Susanti, Biswarup Mukhopadhyay, Venkat Gopalan.   

Abstract

To the mounting evidence of nonribosomal functions for ribosomal proteins, we now add L7Ae as a subunit of archaeal RNase P, a ribonucleoprotein (RNP) that catalyzes 5'-maturation of precursor tRNAs (pre-tRNAs). We first demonstrate that L7Ae coelutes with partially purified Methanococcus maripaludis (Mma) RNase P activity. After establishing in vitro reconstitution of the single RNA with four previously known protein subunits (POP5, RPP21, RPP29, and RPP30), we show that addition of L7Ae to this RNase P complex increases the optimal reaction temperature and k(cat)/K(m) (by approximately 360-fold) for pre-tRNA cleavage to those observed with partially purified native Mma RNase P. We identify in the Mma RNase P RNA a putative kink-turn (K-turn), the structural motif recognized by L7Ae. The large stimulatory effect of Mma L7Ae on RNase P activity decreases to <or= 4% of wild type upon mutating either the conserved nucleotides in this K-turn or amino acids in L7Ae shown to be essential for K-turn binding. The critical, multifunctional role of archaeal L7Ae in RNPs acting in tRNA processing (RNase P), RNA modification (H/ACA, C/D snoRNPs), and translation (ribosomes), especially by employing the same RNA-recognition surface, suggests coevolution of various translation-related functions, presumably to facilitate their coordinate regulation.

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Year:  2010        PMID: 20675586      PMCID: PMC2930468          DOI: 10.1073/pnas.1005556107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  43 in total

1.  A common core RNP structure shared between the small nucleoar box C/D RNPs and the spliceosomal U4 snRNP.

Authors:  N J Watkins; V Ségault; B Charpentier; S Nottrott; P Fabrizio; A Bachi; M Wilm; M Rosbash; C Branlant; R Lührmann
Journal:  Cell       Date:  2000-10-27       Impact factor: 41.582

2.  Ribonuclease P: the evolution of an ancient RNA enzyme.

Authors:  Scott C Walker; David R Engelke
Journal:  Crit Rev Biochem Mol Biol       Date:  2006 Mar-Apr       Impact factor: 8.250

3.  Evidence that substrate-specific effects of C5 protein lead to uniformity in binding and catalysis by RNase P.

Authors:  Lei Sun; Frank E Campbell; Nathan H Zahler; Michael E Harris
Journal:  EMBO J       Date:  2006-08-24       Impact factor: 11.598

4.  Functional reconstitution and characterization of Pyrococcus furiosus RNase P.

Authors:  Hsin-Yue Tsai; Dileep K Pulukkunat; Walter K Woznick; Venkat Gopalan
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-19       Impact factor: 11.205

5.  Eukaryotic RNase P RNA mediates cleavage in the absence of protein.

Authors:  Ema Kikovska; Staffan G Svärd; Leif A Kirsebom
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-06       Impact factor: 11.205

6.  The crystal structure of the Methanocaldococcus jannaschii multifunctional L7Ae RNA-binding protein reveals an induced-fit interaction with the box C/D RNAs.

Authors:  Jimmy Suryadi; Elizabeth J Tran; E Stuart Maxwell; Bernard A Brown
Journal:  Biochemistry       Date:  2005-07-19       Impact factor: 3.162

7.  A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3.

Authors:  Hideo Fukuhara; Mayumi Kifusa; Mitsutoshi Watanabe; Atsushi Terada; Takashi Honda; Tomoyuki Numata; Yoshimitsu Kakuta; Makoto Kimura
Journal:  Biochem Biophys Res Commun       Date:  2006-03-15       Impact factor: 3.575

8.  Dissecting functional cooperation among protein subunits in archaeal RNase P, a catalytic ribonucleoprotein complex.

Authors:  Wen-Yi Chen; Dileep K Pulukkunat; I-Ming Cho; Hsin-Yue Tsai; Venkat Gopalan
Journal:  Nucleic Acids Res       Date:  2010-08-12       Impact factor: 16.971

9.  Inventory and analysis of the protein subunits of the ribonucleases P and MRP provides further evidence of homology between the yeast and human enzymes.

Authors:  Magnus Alm Rosenblad; Marcela Dávila López; Paul Piccinelli; Tore Samuelsson
Journal:  Nucleic Acids Res       Date:  2006-09-22       Impact factor: 16.971

10.  Identification and analysis of ribonuclease P and MRP RNA in a broad range of eukaryotes.

Authors:  Paul Piccinelli; Magnus Alm Rosenblad; Tore Samuelsson
Journal:  Nucleic Acids Res       Date:  2005-08-08       Impact factor: 16.971

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  40 in total

Review 1.  tRNA biology charges to the front.

Authors:  Eric M Phizicky; Anita K Hopper
Journal:  Genes Dev       Date:  2010-09-01       Impact factor: 11.361

2.  Functional implication of archaeal homologues of human RNase P protein pair Pop5 and Rpp30.

Authors:  Masato Hamasaki; Kohsuke Hazeyama; Fumihiko Iwasaki; Toshifumi Ueda; Takashi Nakashima; Yoshimitsu Kakuta; Makoto Kimura
Journal:  J Biochem       Date:  2015-07-07       Impact factor: 3.387

3.  Thermodynamics of coupled folding in the interaction of archaeal RNase P proteins RPP21 and RPP29.

Authors:  Yiren Xu; Sri Vidya Oruganti; Venkat Gopalan; Mark P Foster
Journal:  Biochemistry       Date:  2012-01-18       Impact factor: 3.162

4.  Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K-turn motif.

Authors:  Kosuke Oshima; Xuzhu Gao; Seiichiro Hayashi; Toshifumi Ueda; Takashi Nakashima; Makoto Kimura
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2018-01-01       Impact factor: 1.056

5.  Cooperative RNP assembly: complementary rescue of structural defects by protein and RNA subunits of archaeal RNase P.

Authors:  Wen-Yi Chen; Yiren Xu; I-Ming Cho; Sri Vidya Oruganti; Mark P Foster; Venkat Gopalan
Journal:  J Mol Biol       Date:  2011-06-12       Impact factor: 5.469

6.  Structural organizations of yeast RNase P and RNase MRP holoenzymes as revealed by UV-crosslinking studies of RNA-protein interactions.

Authors:  Elena Khanova; Olga Esakova; Anna Perederina; Igor Berezin; Andrey S Krasilnikov
Journal:  RNA       Date:  2012-02-13       Impact factor: 4.942

7.  Evidence for recycling of external guide sequences during cleavage of bipartite substrates in vitro by reconstituted archaeal RNase P.

Authors:  I-Ming Cho; Sergei A Kazakov; Venkat Gopalan
Journal:  J Mol Biol       Date:  2010-12-07       Impact factor: 5.469

8.  YbxF and YlxQ are bacterial homologs of L7Ae and bind K-turns but not K-loops.

Authors:  Nathan J Baird; Jinwei Zhang; Tomoko Hamma; Adrian R Ferré-D'Amaré
Journal:  RNA       Date:  2012-02-21       Impact factor: 4.942

Review 9.  Evolution of the archaeal and mammalian information processing systems: towards an archaeal model for human disease.

Authors:  Zhe Lyu; William B Whitman
Journal:  Cell Mol Life Sci       Date:  2016-06-03       Impact factor: 9.261

10.  Uncovering the stoichiometry of Pyrococcus furiosus RNase P, a multi-subunit catalytic ribonucleoprotein complex, by surface-induced dissociation and ion mobility mass spectrometry.

Authors:  Xin Ma; Lien B Lai; Stella M Lai; Akiko Tanimoto; Mark P Foster; Vicki H Wysocki; Venkat Gopalan
Journal:  Angew Chem Int Ed Engl       Date:  2014-09-04       Impact factor: 15.336

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