Literature DB >> 20670889

Defining the pathway of cytoplasmic maturation of the 60S ribosomal subunit.

Kai-Yin Lo1, Zhihua Li, Cyril Bussiere, Stefan Bresson, Edward M Marcotte, Arlen W Johnson.   

Abstract

In eukaryotic cells the final maturation of ribosomes occurs in the cytoplasm, where trans-acting factors are removed and critical ribosomal proteins are added for functionality. Here, we have carried out a comprehensive analysis of cytoplasmic maturation, ordering the known steps into a coherent pathway. Maturation is initiated by the ATPase Drg1. Downstream, assembly of the ribosome stalk is essential for the release of Tif6. The stalk recruits GTPases during translation. Because the GTPase Efl1, which is required for the release of Tif6, resembles the translation elongation factor eEF2, we suggest that assembly of the stalk recruits Efl1, triggering a step in 60S biogenesis that mimics aspects of translocation. Efl1 could thereby provide a mechanism to functionally check the nascent subunit. Finally, the release of Tif6 is a prerequisite for the release of the nuclear export adaptor Nmd3. Establishing this pathway provides an important conceptual framework for understanding ribosome maturation. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20670889      PMCID: PMC2925414          DOI: 10.1016/j.molcel.2010.06.018

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  45 in total

1.  The specialized cytosolic J-protein, Jjj1, functions in 60S ribosomal subunit biogenesis.

Authors:  Alison E Meyer; Nai-Jung Hung; Peizhen Yang; Arlen W Johnson; Elizabeth A Craig
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-22       Impact factor: 11.205

Review 2.  Nuclear export and cytoplasmic maturation of ribosomal subunits.

Authors:  Ivo Zemp; Ulrike Kutay
Journal:  FEBS Lett       Date:  2007-05-11       Impact factor: 4.124

3.  Yeast ribosomal P0 protein has two separate binding sites for P1/P2 proteins.

Authors:  Dawid Krokowski; Aleksandra Boguszewska; Dariusz Abramczyk; Anders Liljas; Marek Tchórzewski; Nikodem Grankowski
Journal:  Mol Microbiol       Date:  2006-04       Impact factor: 3.501

4.  Mapping the functional domains of yeast NMD3, the nuclear export adapter for the 60 S ribosomal subunit.

Authors:  John Hedges; Yen-I Chen; Matthew West; Cyril Bussiere; Arlen W Johnson
Journal:  J Biol Chem       Date:  2006-10-02       Impact factor: 5.157

5.  Nuclear recycling of the pre-60S ribosomal subunit-associated factor Arx1 depends on Rei1 in Saccharomyces cerevisiae.

Authors:  Nai-Jung Hung; Arlen W Johnson
Journal:  Mol Cell Biol       Date:  2006-05       Impact factor: 4.272

6.  Defining the order in which Nmd3p and Rpl10p load onto nascent 60S ribosomal subunits.

Authors:  Matthew West; John B Hedges; Anthony Chen; Arlen W Johnson
Journal:  Mol Cell Biol       Date:  2005-05       Impact factor: 4.272

7.  Release of the export adapter, Nmd3p, from the 60S ribosomal subunit requires Rpl10p and the cytoplasmic GTPase Lsg1p.

Authors:  John Hedges; Matthew West; Arlen W Johnson
Journal:  EMBO J       Date:  2005-01-20       Impact factor: 11.598

Review 8.  Insights into protein biosynthesis from structures of bacterial ribosomes.

Authors:  Veysel Berk; Jamie H D Cate
Journal:  Curr Opin Struct Biol       Date:  2007-06-15       Impact factor: 6.809

9.  The Shwachman-Bodian-Diamond syndrome protein mediates translational activation of ribosomes in yeast.

Authors:  Tobias F Menne; Beatriz Goyenechea; Nuria Sánchez-Puig; Chi C Wong; Louise M Tonkin; Philip J Ancliff; Renée L Brost; Michael Costanzo; Charles Boone; Alan J Warren
Journal:  Nat Genet       Date:  2007-03-11       Impact factor: 38.330

10.  A functional network involved in the recycling of nucleocytoplasmic pre-60S factors.

Authors:  Alice Lebreton; Cosmin Saveanu; Laurence Decourty; Jean-Christophe Rain; Alain Jacquier; Micheline Fromont-Racine
Journal:  J Cell Biol       Date:  2006-05-01       Impact factor: 10.539

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  106 in total

1.  Cryo-EM structure of the archaeal 50S ribosomal subunit in complex with initiation factor 6 and implications for ribosome evolution.

Authors:  Basil J Greber; Daniel Boehringer; Vlatka Godinic-Mikulcic; Ana Crnkovic; Michael Ibba; Ivana Weygand-Durasevic; Nenad Ban
Journal:  J Mol Biol       Date:  2012-01-27       Impact factor: 5.469

2.  Ribosomal 60S-subunit production: the final scene.

Authors:  Célia Plisson-Chastang; Natacha Larburu; Pierre-Emmanuel Gleizes
Journal:  Nat Struct Mol Biol       Date:  2015-11       Impact factor: 15.369

3.  Architecture of the Rix1-Rea1 checkpoint machinery during pre-60S-ribosome remodeling.

Authors:  Clara Barrio-Garcia; Matthias Thoms; Dirk Flemming; Lukas Kater; Otto Berninghausen; Jochen Baßler; Roland Beckmann; Ed Hurt
Journal:  Nat Struct Mol Biol       Date:  2015-11-30       Impact factor: 15.369

Review 4.  Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins.

Authors:  Michael Gamalinda; John L Woolford
Journal:  Translation (Austin)       Date:  2015-02-02

5.  Defining the RNA interactome by total RNA-associated protein purification.

Authors:  Vadim Shchepachev; Stefan Bresson; Christos Spanos; Elisabeth Petfalski; Lutz Fischer; Juri Rappsilber; David Tollervey
Journal:  Mol Syst Biol       Date:  2019-04-08       Impact factor: 11.429

6.  CRM1 and its ribosome export adaptor NMD3 localize to the nucleolus and affect rRNA synthesis.

Authors:  Baoyan Bai; Henna M Moore; Marikki Laiho
Journal:  Nucleus       Date:  2013-06-12       Impact factor: 4.197

7.  Monosome formation during translation initiation requires the serine/arginine-rich protein Npl3.

Authors:  Claudia Baierlein; Alexandra Hackmann; Thomas Gross; Lysann Henker; Frederik Hinz; Heike Krebber
Journal:  Mol Cell Biol       Date:  2013-10-07       Impact factor: 4.272

8.  Dynamics of the putative RNA helicase Spb4 during ribosome assembly in Saccharomyces cerevisiae.

Authors:  Juan José García-Gómez; Simon Lebaron; Carine Froment; Bernard Monsarrat; Yves Henry; Jesús de la Cruz
Journal:  Mol Cell Biol       Date:  2011-08-08       Impact factor: 4.272

9.  MicroRNAs as molecular classifiers for cancer.

Authors:  Aaron J Schetter; Curtis C Harris
Journal:  Cell Cycle       Date:  2011-09-01       Impact factor: 4.534

10.  Immature large ribosomal subunits containing the 7S pre-rRNA can engage in translation in Saccharomyces cerevisiae.

Authors:  Olga Rodríguez-Galán; Juan J García-Gómez; Dieter Kressler; Jesús de la Cruz
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

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