Literature DB >> 20664208

Expected monotonicity--a desirable property for evidence measures?

Susan E Hodge1, Veronica J Vieland.   

Abstract

We consider here the principle of 'evidential consistency' - that as one gathers more data, any well-behaved evidence measure should, in some sense, approach the true answer. Evidential consistency is essential for the genome-scan design (GWAS or linkage), where one selects the most promising locus(i) for follow-up, expecting that new data will increase evidence for the correct hypothesis. Earlier work [Vieland, Hum Hered 2006;61:144-156] showed that many popular statistics do not satisfy this principle; Vieland concluded that the problem stems from fundamental difficulties in how we measure evidence and argued for determining criteria to evaluate evidence measures. Here, we investigate in detail one proposed consistency criterion - expected monotonicity (ExpM) - for a simple statistical model (binomial) and four likelihood ratio (LR)-based evidence measures. We show that, with one limited exception, none of these measures displays ExpM; what they do display is sometimes counterintuitive. We conclude that ExpM is not a reasonable requirement for evidence measures; moreover, no requirement based on expected values seems feasible. We demonstrate certain desirable properties of the simple LR and demonstrate a connection between the simple and integrated LRs. We also consider an alternative version of consistency, which is satisfied by certain forms of the integrated LR and posterior probability of linkage.
Copyright © 2010 S. Karger AG, Basel.

Mesh:

Year:  2010        PMID: 20664208      PMCID: PMC3046775          DOI: 10.1159/000313789

Source DB:  PubMed          Journal:  Hum Hered        ISSN: 0001-5652            Impact factor:   0.444


  8 in total

1.  Power to detect linkage based on multiple sets of data in the presence of locus heterogeneity: comparative evaluation of model-based linkage methods for affected sib pair data.

Authors:  V J Vieland; K Wang; J Huang
Journal:  Hum Hered       Date:  2001       Impact factor: 0.444

2.  Comparison of 'model-free' and 'model-based' linkage statistics in the presence of locus heterogeneity: single data set and multiple data set applications.

Authors:  J Huang; V J Vieland
Journal:  Hum Hered       Date:  2001       Impact factor: 0.444

3.  Sequential tests for the detection of linkage.

Authors:  N E MORTON
Journal:  Am J Hum Genet       Date:  1955-09       Impact factor: 11.025

4.  Thermometers: something for statistical geneticists to think about.

Authors:  Veronica J Vieland
Journal:  Hum Hered       Date:  2006-06-12       Impact factor: 0.444

5.  An alternative foundation for the planning and evaluation of linkage analysis. I. Decoupling "error probabilities" from "measures of evidence".

Authors:  Lisa J Strug; Susan E Hodge
Journal:  Hum Hered       Date:  2006-07-25       Impact factor: 0.444

6.  Accumulating quantitative trait linkage evidence across multiple datasets using the posterior probability of linkage.

Authors:  Christopher W Bartlett; Veronica J Vieland
Journal:  Genet Epidemiol       Date:  2007-02       Impact factor: 2.135

Review 7.  Non-replication of association studies: "pseudo-failures" to replicate?

Authors:  Prakash Gorroochurn; Susan E Hodge; Gary A Heiman; Martina Durner; David A Greenberg
Journal:  Genet Med       Date:  2007-06       Impact factor: 8.822

8.  Bayesian linkage analysis, or: how I learned to stop worrying and love the posterior probability of linkage.

Authors:  V J Vieland
Journal:  Am J Hum Genet       Date:  1998-10       Impact factor: 11.025

  8 in total
  3 in total

1.  Where's the evidence?

Authors:  Veronica J Vieland
Journal:  Hum Hered       Date:  2011-03-22       Impact factor: 0.444

2.  Measurement of statistical evidence on an absolute scale following thermodynamic principles.

Authors:  V J Vieland; J Das; S E Hodge; S-C Seok
Journal:  Theory Biosci       Date:  2013-03-05       Impact factor: 1.919

3.  KELVIN: a software package for rigorous measurement of statistical evidence in human genetics.

Authors:  Veronica J Vieland; Yungui Huang; Sang-Cheol Seok; John Burian; Umit Catalyurek; Jeffrey O'Connell; Alberto Segre; William Valentine-Cooper
Journal:  Hum Hered       Date:  2011-12-23       Impact factor: 0.444

  3 in total

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