Literature DB >> 20660785

Error-free replicative bypass of thymine glycol by the combined action of DNA polymerases kappa and zeta in human cells.

Jung-Hoon Yoon1, Gita Bhatia, Satya Prakash, Louise Prakash.   

Abstract

Thymine glycol (Tg) is the most common DNA lesion of thymine induced by interaction with reactive oxygen species. Because of the addition of hydroxyl groups at C5 and C6 in a Tg lesion, the damaged base loses its aromatic character and becomes nonplanar; consequently, the C5 methyl group protrudes in an axial direction and that prevents the stacking of the 5' base above the Tg lesion. Because Tg presents a severe block to continued synthesis by replicative DNA polymerases, we determine here how human cells manage to replicate through this lesion. Using a duplex plasmid system where bidirectional replication ensues from an origin of replication, we show that translesion synthesis (TLS) makes a prominent contribution to Tg bypass and that it occurs in a predominantly error-free fashion. Also, we provide evidence that Pol kappa and Pol zeta function together in promoting error-free replication through the lesion, and based on structural and biochemical information, we propose a role for Pol kappa at the insertion step and of Pol zeta at the extension step of Tg bypass. We discuss the implications of these observations and suggest that human cells have adapted the TLS machinery to function in a much more error-free fashion than could have been predicted from the intrinsic catalytic efficiencies and fidelities of TLS polymerases.

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Year:  2010        PMID: 20660785      PMCID: PMC2922520          DOI: 10.1073/pnas.1007795107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  30 in total

1.  Structure of the catalytic core of S. cerevisiae DNA polymerase eta: implications for translesion DNA synthesis.

Authors:  J Trincao; R E Johnson; C R Escalante; S Prakash; L Prakash; A K Aggarwal
Journal:  Mol Cell       Date:  2001-08       Impact factor: 17.970

2.  Roles of yeast DNA polymerases delta and zeta and of Rev1 in the bypass of abasic sites.

Authors:  L Haracska; I Unk; R E Johnson; E Johansson; P M Burgers; S Prakash; L Prakash
Journal:  Genes Dev       Date:  2001-04-15       Impact factor: 11.361

3.  Eukaryotic polymerases iota and zeta act sequentially to bypass DNA lesions.

Authors:  R E Johnson; M T Washington; L Haracska; S Prakash; L Prakash
Journal:  Nature       Date:  2000-08-31       Impact factor: 49.962

4.  Thymine fragment damage retained in the DNA polynucleotide chain after gamma irradiation in aerated solutions. II.

Authors:  R Teoule; C Bert; A Bonicel
Journal:  Radiat Res       Date:  1977-11       Impact factor: 2.841

5.  Translesion synthesis by human DNA polymerase eta across thymine glycol lesions.

Authors:  Rika Kusumoto; Chikahide Masutani; Shigenori Iwai; Fumio Hanaoka
Journal:  Biochemistry       Date:  2002-05-14       Impact factor: 3.162

6.  Error-free replicative bypass of (6-4) photoproducts by DNA polymerase zeta in mouse and human cells.

Authors:  Jung-Hoon Yoon; Louise Prakash; Satya Prakash
Journal:  Genes Dev       Date:  2010-01-15       Impact factor: 11.361

7.  Replication by human DNA polymerase-iota occurs by Hoogsteen base-pairing.

Authors:  Deepak T Nair; Robert E Johnson; Satya Prakash; Louise Prakash; Aneel K Aggarwal
Journal:  Nature       Date:  2004-07-15       Impact factor: 49.962

8.  Human DNA polymerase kappa bypasses and extends beyond thymine glycols during translesion synthesis in vitro, preferentially incorporating correct nucleotides.

Authors:  Paula L Fischhaber; Valerie L Gerlach; William J Feaver; Zafer Hatahet; Susan S Wallace; Errol C Friedberg
Journal:  J Biol Chem       Date:  2002-07-26       Impact factor: 5.157

9.  Yeast DNA polymerase zeta (zeta) is essential for error-free replication past thymine glycol.

Authors:  Robert E Johnson; Sung-Lim Yu; Satya Prakash; Louise Prakash
Journal:  Genes Dev       Date:  2003-01-01       Impact factor: 11.361

10.  Lesion bypass in yeast cells: Pol eta participates in a multi-DNA polymerase process.

Authors:  Anne Bresson; Robert P P Fuchs
Journal:  EMBO J       Date:  2002-07-15       Impact factor: 11.598

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  33 in total

1.  Error-Prone Replication through UV Lesions by DNA Polymerase θ Protects against Skin Cancers.

Authors:  Jung-Hoon Yoon; Mark J McArthur; Jeseong Park; Debashree Basu; Maki Wakamiya; Louise Prakash; Satya Prakash
Journal:  Cell       Date:  2019-02-14       Impact factor: 41.582

2.  Identification of two functional PCNA-binding domains in human DNA polymerase κ.

Authors:  Jung-Hoon Yoon; Narottam Acharya; Jeseong Park; Debashree Basu; Satya Prakash; Louise Prakash
Journal:  Genes Cells       Date:  2014-05-22       Impact factor: 1.891

3.  Genetic control of predominantly error-free replication through an acrolein-derived minor-groove DNA adduct.

Authors:  Jung-Hoon Yoon; Richard P Hodge; Linda C Hackfeld; Jeseong Park; Jayati Roy Choudhury; Satya Prakash; Louise Prakash
Journal:  J Biol Chem       Date:  2018-01-12       Impact factor: 5.157

4.  Translesion synthesis DNA polymerases η, ι, and ν promote mutagenic replication through the anticancer nucleoside cytarabine.

Authors:  Jung-Hoon Yoon; Jayati Roy Choudhury; Louise Prakash; Satya Prakash
Journal:  J Biol Chem       Date:  2019-11-04       Impact factor: 5.157

Review 5.  DNA polymerases and cancer.

Authors:  Sabine S Lange; Kei-ichi Takata; Richard D Wood
Journal:  Nat Rev Cancer       Date:  2011-02       Impact factor: 60.716

6.  Translesion synthesis DNA polymerases promote error-free replication through the minor-groove DNA adduct 3-deaza-3-methyladenine.

Authors:  Jung-Hoon Yoon; Jayati Roy Choudhury; Jeseong Park; Satya Prakash; Louise Prakash
Journal:  J Biol Chem       Date:  2017-09-22       Impact factor: 5.157

7.  The roles of polymerases ν and θ in replicative bypass of O 6- and N 2-alkyl-2'-deoxyguanosine lesions in human cells.

Authors:  Hua Du; Pengcheng Wang; Jun Wu; Xiaomei He; Yinsheng Wang
Journal:  J Biol Chem       Date:  2020-02-25       Impact factor: 5.157

8.  Genomic assay reveals tolerance of DNA damage by both translesion DNA synthesis and homology-dependent repair in mammalian cells.

Authors:  Lior Izhar; Omer Ziv; Isadora S Cohen; Nicholas E Geacintov; Zvi Livneh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-25       Impact factor: 11.205

9.  Translesion synthesis of 8,5'-cyclopurine-2'-deoxynucleosides by DNA polymerases η, ι, and ζ.

Authors:  Changjun You; Ashley L Swanson; Xiaoxia Dai; Bifeng Yuan; Jianshuang Wang; Yinsheng Wang
Journal:  J Biol Chem       Date:  2013-08-21       Impact factor: 5.157

10.  Mutagenic spectra arising from replication bypass of the 2,6-diamino-4-hydroxy-N(5)-methyl formamidopyrimidine adduct in primate cells.

Authors:  Lauriel F Earley; Irina G Minko; Plamen P Christov; Carmelo J Rizzo; R Stephen Lloyd
Journal:  Chem Res Toxicol       Date:  2013-06-13       Impact factor: 3.739

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