Literature DB >> 20660784

Investigation of protein conformation and interactions with salts via X-ray absorption spectroscopy.

Craig P Schwartz1, Janel S Uejio, Andrew M Duffin, Alice H England, Daniel N Kelly, David Prendergast, Richard J Saykally.   

Abstract

Nitrogen K-edge spectra of aqueous triglycine were measured using liquid microjets, and the effects of Hofmeister-active salts on the spectra were observed. Spectra simulated using density functional theory, sampled from room temperature classical molecular dynamics trajectories, capture all major features in the measured spectra. The spectrum of triglycine in water is quite similar to that in the presence of chaotropic sodium bromide (and other halides), which raises the solubility of proteins. However, a new feature is found when kosmotropic Na(2)SO(3), which lowers solubility, is present; this feature results from excitations of the nitrogen atom in the terminal amino group of triglycine. Both direct interactions between this salt and the protonated amino terminus, as well as corresponding changes in the conformational dynamics of the system, contribute to this new feature. These molecular measurements support a different mechanism for the Hofmeister effect than has previously been suggested based on thermodynamic measurements. It is also shown that near edge X-ray absorption fine structure (NEXAFS) is sensitive to strong direct interaction between certain salts and charged peptides. However, by investigating the sensitivity of NEXAFS to the extreme structural differences between model beta-sheets and alpha-helices, we conclude that this technique is relatively insensitive to secondary structure of peptides and proteins.

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Year:  2010        PMID: 20660784      PMCID: PMC2922578          DOI: 10.1073/pnas.1006435107

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  26 in total

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6.  Is X-ray absorption spectroscopy sensitive to the amino acid composition of functional proteins?

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7.  Cation specific binding with protein surface charges.

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8.  Effects of Salts of the Hofmeister Series on the Hydrogen Bond Network of Water.

Authors:  Nathaniel V Nucci; Jane M Vanderkooi
Journal:  J Mol Liq       Date:  2008-10-20       Impact factor: 6.165

9.  Cation-specific interactions with carboxylate in amino acid and acetate aqueous solutions: X-ray absorption and ab initio calculations.

Authors:  Emad F Aziz; Niklas Ottosson; Stefan Eisebitt; Wolfgang Eberhardt; Barbara Jagoda-Cwiklik; Robert Vácha; Pavel Jungwirth; Bernd Winter
Journal:  J Phys Chem B       Date:  2008-08-16       Impact factor: 2.991

10.  NEXAFS spectroscopy of homopolypeptides at all relevant absorption edges: polyisoleucine, polytyrosine, and polyhistidine.

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Journal:  J Phys Chem B       Date:  2007-07-31       Impact factor: 2.991

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  6 in total

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Journal:  J Phys Chem Lett       Date:  2013-10-09       Impact factor: 6.475

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6.  Probing ion-specific effects on aqueous acetate solutions: Ion pairing versus water structure modifications.

Authors:  Tristan Petit; Kathrin M Lange; Gerrit Conrad; Kenji Yamamoto; Christoph Schwanke; Kai F Hodeck; Marcus Dantz; Tim Brandenburg; Edlira Suljoti; Emad F Aziz
Journal:  Struct Dyn       Date:  2014-06-18       Impact factor: 2.920

  6 in total

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