Literature DB >> 20651728

Sequence-selective assembly of tweezer molecules on linear templates enables frameshift-reading of sequence information.

Zhixue Zhu1, Christine J Cardin, Yu Gan, Howard M Colquhoun.   

Abstract

Information storage and processing is carried out at the level of individual macromolecules in biological systems, but there is no reason, in principle, why synthetic copolymers should not be used for the same purpose. Previous work has suggested that monomer sequence information in chain-folding synthetic copolyimides can be recognized by tweezer-type molecules binding to adjacent triplet sequences, and we show here that different tweezer molecules can show different sequence selectivities. This work, based on (1)H NMR spectroscopy in solution and on single-crystal X-ray analysis of tweezer-oligomer complexes in the solid state, provides the first clear-cut demonstration of polyimide chain-folding and adjacent-tweezer binding. It also reveals a new and entirely unexpected mechanism for sequence recognition, which, by analogy with a related process in biomolecular information processing, may be termed 'frameshift-reading'. The ability of one particular tweezer molecule to detect, with exceptionally high sensitivity, long-range sequence information in chain-folding aromatic copolyimides is readily explained by this novel process.

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Year:  2010        PMID: 20651728     DOI: 10.1038/nchem.699

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  27 in total

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Authors:  Andrew J Goshe; Ian M Steele; Christopher Ceccarelli; Arnold L Rheingold; B Bosnich
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-16       Impact factor: 11.205

2.  Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.

Authors:  J D WATSON; F H CRICK
Journal:  Nature       Date:  1953-04-25       Impact factor: 49.962

3.  Recognition of polyimide sequence information by a molecular tweezer.

Authors:  Howard M Colquhoun; Zhixue Zhu
Journal:  Angew Chem Int Ed Engl       Date:  2004-09-27       Impact factor: 15.336

4.  Chiral molecular tweezers.

Authors:  Michael Harmata
Journal:  Acc Chem Res       Date:  2004-11       Impact factor: 22.384

5.  Synthesis of a novel triptycene-based molecular tweezer and its complexation with paraquat derivatives.

Authors:  Xiao-Xia Peng; Hai-Yan Lu; Tao Han; Chuan-Feng Chen
Journal:  Org Lett       Date:  2007-01-30       Impact factor: 6.005

6.  A new doubly interlocked [2]catenane.

Authors:  Carlos Peinador; Víctor Blanco; José M Quintela
Journal:  J Am Chem Soc       Date:  2009-01-28       Impact factor: 15.419

7.  Macrocyclic aromatic ether-imide-sulfones: versatile supramolecular receptors with extreme thermochemical and oxidative stability.

Authors:  Howard M Colquhoun; David J Williams; Zhixue Zhu
Journal:  J Am Chem Soc       Date:  2002-11-13       Impact factor: 15.419

8.  Recognition of sequence-information in synthetic copolymer chains by a conformationally-constrained tweezer molecule.

Authors:  Howard M Colquhoun; Zhixue Zhu; Christine J Cardin; Michael G B Drew; Yu Gan
Journal:  Faraday Discuss       Date:  2009       Impact factor: 4.008

9.  Molecular tweezers and clips as synthetic receptors. Molecular recognition and dynamics in receptor-substrate complexes.

Authors:  Frank-Gerrit Klärner; Björn Kahlert
Journal:  Acc Chem Res       Date:  2003-12       Impact factor: 22.384

10.  Switchable neutral bistable rotaxanes.

Authors:  Scott A Vignon; Thibaut Jarrosson; Takahiro Iijima; Hsian-Rong Tseng; Jeremy K M Sanders; J Fraser Stoddart
Journal:  J Am Chem Soc       Date:  2004-08-18       Impact factor: 15.419

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  11 in total

1.  Supramolecular chemistry: Reading polymer codes.

Authors:  Ken D Shimizu
Journal:  Nat Chem       Date:  2010-08       Impact factor: 24.427

2.  Information-containing macromolecules.

Authors:  Howard Colquhoun; Jean-François Lutz
Journal:  Nat Chem       Date:  2014-06       Impact factor: 24.427

3.  2-(2-Carb-oxy-eth-yl)-1,3-dioxoisoindoline-5,6-dicarb-oxy-lic acid methanol monosolvate.

Authors:  Sanaz Khorasani; Manuel A Fernandes
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-12-14

4.  Design and synthesis of digitally encoded polymers that can be decoded and erased.

Authors:  Raj Kumar Roy; Anna Meszynska; Chloé Laure; Laurence Charles; Claire Verchin; Jean-François Lutz
Journal:  Nat Commun       Date:  2015-05-26       Impact factor: 14.919

Review 5.  A journey in bioinspired supramolecular chemistry: from molecular tweezers to small molecules that target myotonic dystrophy.

Authors:  Steven C Zimmerman
Journal:  Beilstein J Org Chem       Date:  2016-01-25       Impact factor: 2.883

6.  Molecular computing: paths to chemical Turing machines.

Authors:  Shaji Varghese; Johannes A A W Elemans; Alan E Rowan; Roeland J M Nolte
Journal:  Chem Sci       Date:  2015-08-06       Impact factor: 9.825

7.  Simultaneous complementary photoswitching of hemithioindigo tweezers for dynamic guest relocalization.

Authors:  Sandra Wiedbrauk; Thomas Bartelmann; Stefan Thumser; Peter Mayer; Henry Dube
Journal:  Nat Commun       Date:  2018-04-13       Impact factor: 14.919

8.  Elements of fractal geometry in the 1H NMR spectrum of a copolymer intercalation-complex: identification of the underlying Cantor set.

Authors:  John S Shaw; Rajendran Vaiyapuri; Matthew P Parker; Claire A Murray; Kate J C Lim; Cong Pan; Marcus Knappert; Christine J Cardin; Barnaby W Greenland; Ricardo Grau-Crespo; Howard M Colquhoun
Journal:  Chem Sci       Date:  2018-03-27       Impact factor: 9.825

9.  Design and synthesis of a 4-aminoquinoline-based molecular tweezer that recognizes protoporphyrin IX and iron(iii) protoporphyrin IX and its application as a supramolecular photosensitizer.

Authors:  Yosuke Hisamatsu; Naoki Umezawa; Hirokazu Yagi; Koichi Kato; Tsunehiko Higuchi
Journal:  Chem Sci       Date:  2018-08-31       Impact factor: 9.825

10.  Calcium-activated gene transfection from DNA/poly(amic acid-co-imide) complexes.

Authors:  Szu-Yuan Wu; Li-Ting Chang; Sydeny Peng; Hsieh-Chih Tsai
Journal:  Int J Nanomedicine       Date:  2015-02-27
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