Literature DB >> 20647766

Human non-CG methylation: are human stem cells plant-like?

Olga V Dyachenko1, Tara V Schevchuk, Leo Kretzner, Yaroslav I Buryanov, Steven S Smith.   

Abstract

Non-CG methylation is well characterized in plants, where it appears to play a role in gene silencing and genomic imprinting. Although strong evidence for the presence of non-CG methylation in animals has been available for some time, both its origin and function remain elusive. In this review we discuss available evidence on non-CG methylation in animals in light of evidence suggesting that the human stem cell methylome contains significant levels of methylation outside the CG site.

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Year:  2010        PMID： 20647766      PMCID： PMC3037444          DOI： 10.4161/epi.5.7.12702

Source DB:  PubMed          Journal:  Epigenetics        ISSN： 1559-2294            Impact factor:   4.528


  47 in total

1.  Conserved plant genes with similarity to mammalian de novo DNA methyltransferases.

Authors:  X Cao; N M Springer; M G Muszynski; R L Phillips; S Kaeppler; S E Jacobsen
Journal:  Proc Natl Acad Sci U S A       Date:  2000-04-25       Impact factor: 11.205

2.  Genomic sequencing and methylation analysis by ligation mediated PCR.

Authors:  G P Pfeifer; S D Steigerwald; P R Mueller; B Wold; A D Riggs
Journal:  Science       Date:  1989-11-10       Impact factor: 47.728

3.  The CpG dinucleotide and human genetic disease.

Authors:  D N Cooper; H Youssoufian
Journal:  Hum Genet       Date:  1988-02       Impact factor: 4.132

4.  CpG deficiency, dinucleotide distributions and nucleosome positioning.

Authors:  R L Adams; T Davis; A Rinaldi; R Eason
Journal:  Eur J Biochem       Date:  1987-05-15

Review 5.  DNA methylation and CpG suppression.

Authors:  D N Cooper; S Gerber-Huber
Journal:  Cell Differ       Date:  1985-09

6.  Establishment of de novo DNA methylation patterns. Transcription factor binding and deoxycytidine methylation at CpG and non-CpG sequences in an integrated adenovirus promoter.

Authors:  M Toth; U Müller; W Doerfler
Journal:  J Mol Biol       Date:  1990-08-05       Impact factor: 5.469

7.  Small interfering RNA-induced transcriptional gene silencing in human cells.

Authors:  Kevin V Morris; Simon W-L Chan; Steven E Jacobsen; David J Looney
Journal:  Science       Date:  2004-08-05       Impact factor: 47.728

8.  The majority of methylated deoxycytidines in human DNA are not in the CpG dinucleotide.

Authors:  D M Woodcock; P J Crowther; W P Diver
Journal:  Biochem Biophys Res Commun       Date:  1987-06-15       Impact factor: 3.575

9.  Asymmetrical distribution of CpG in an 'average' mammalian gene.

Authors:  M McClelland; R Ivarie
Journal:  Nucleic Acids Res       Date:  1982-12-11       Impact factor: 16.971

10.  A mammalian origin of bidirectional DNA replication within the Chinese hamster RPS14 locus.

Authors:  E S Tasheva; D J Roufa
Journal:  Mol Cell Biol       Date:  1994-09       Impact factor: 4.272
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  14 in total

1.  Eyes on DNA methylation: current evidence for DNA methylation in ocular development and disease.

Authors:  Deborah C Otteson
Journal:  J Ocul Biol Dis Infor       Date:  2012-03-29

2.  Analysis of promoter non-CG methylation in prostate cancer.

Authors:  Matthew Truong; Bing Yang; Jennifer Wagner; Joshua Desotelle; David F Jarrard
Journal:  Epigenomics       Date:  2013-02       Impact factor: 4.778

3.  Base-resolution analyses of sequence and parent-of-origin dependent DNA methylation in the mouse genome.

Authors:  Wei Xie; Cathy L Barr; Audrey Kim; Feng Yue; Ah Young Lee; James Eubanks; Emma L Dempster; Bing Ren
Journal:  Cell       Date:  2012-02-17       Impact factor: 41.582

Review 4.  Non-CG Methylation in the Human Genome.

Authors:  Yupeng He; Joseph R Ecker
Journal:  Annu Rev Genomics Hum Genet       Date:  2015-06-04       Impact factor: 8.929

5.  The effects of the neonicotinoid imidacloprid on gene expression and DNA methylation in the buff-tailed bumblebee Bombus terrestris.

Authors:  P S A Bebane; B J Hunt; M Pegoraro; A R C Jones; H Marshall; E Rosato; E B Mallon
Journal:  Proc Biol Sci       Date:  2019-06-19       Impact factor: 5.349

6.  Single-base resolution of mouse offspring brain methylome reveals epigenome modifications caused by gestational folic acid.

Authors:  Subit Barua; Salomon Kuizon; Kathryn K Chadman; Michael J Flory; W Ted Brown; Mohammed A Junaid
Journal:  Epigenetics Chromatin       Date:  2014-02-03       Impact factor: 4.954

7.  Somatic mutations, allele loss, and DNA methylation of the Cub and Sushi Multiple Domains 1 (CSMD1) gene reveals association with early age of diagnosis in colorectal cancer patients.

Authors:  Austin Y Shull; Megan L Clendenning; Sampa Ghoshal-Gupta; Christopher L Farrell; Hima V Vangapandu; Larry Dudas; Brent J Wilkerson; Phillip J Buckhaults
Journal:  PLoS One       Date:  2013-03-07       Impact factor: 3.240

8.  Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiers.

Authors:  Gareth A Wilson; Pawandeep Dhami; Andrew Feber; Daniel Cortázar; Yuka Suzuki; Reiner Schulz; Primo Schär; Stephan Beck
Journal:  Gigascience       Date:  2012-07-12       Impact factor: 6.524

9.  Characterizing the strand-specific distribution of non-CpG methylation in human pluripotent cells.

Authors:  Weilong Guo; Wen-Yu Chung; Minping Qian; Matteo Pellegrini; Michael Q Zhang
Journal:  Nucleic Acids Res       Date:  2013-12-16       Impact factor: 16.971

10.  Subtelomeric hotspots of aberrant 5-hydroxymethylcytosine-mediated epigenetic modifications during reprogramming to pluripotency.

Authors:  Tao Wang; Hao Wu; Yujing Li; Keith E Szulwach; Li Lin; Xuekun Li; I-Ping Chen; Ian S Goldlust; Stormy J Chamberlain; Ann Dodd; He Gong; Gene Ananiev; Ji Woong Han; Young-sup Yoon; M Katharine Rudd; Miao Yu; Chun-Xiao Song; Chuan He; Qiang Chang; Stephen T Warren; Peng Jin
Journal:  Nat Cell Biol       Date:  2013-05-19       Impact factor: 28.824
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