Literature DB >> 20638891

Palaeogenomics of plants: synteny-based modelling of extinct ancestors.

Michael Abrouk1, Florent Murat, Caroline Pont, Joachim Messing, Scott Jackson, Thomas Faraut, Eric Tannier, Christophe Plomion, Richard Cooke, Catherine Feuillet, Jérôme Salse.   

Abstract

In the past ten years, international initiatives have led to the development of large sets of genomic resources that allow comparative genomic studies between plant genomes at a high level of resolution. Comparison of map-based genomic sequences revealed shared intra-genomic duplications, providing new insights into the evolution of flowering plant genomes from common ancestors. Plant genomes can be presented as concentric circles, providing a new reference for plant chromosome evolutionary relationships and an efficient tool for gene annotation and cross-genome markers development. Recent palaeogenomic data demonstrate that whole-genome duplications have provided a motor for the evolutionary success of flowering plants over the last 50-70 million years. 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20638891     DOI: 10.1016/j.tplants.2010.06.001

Source DB:  PubMed          Journal:  Trends Plant Sci        ISSN: 1360-1385            Impact factor:   18.313


  64 in total

1.  The genome of Theobroma cacao.

Authors:  Xavier Argout; Jerome Salse; Jean-Marc Aury; Mark J Guiltinan; Gaetan Droc; Jerome Gouzy; Mathilde Allegre; Cristian Chaparro; Thierry Legavre; Siela N Maximova; Michael Abrouk; Florent Murat; Olivier Fouet; Julie Poulain; Manuel Ruiz; Yolande Roguet; Maguy Rodier-Goud; Jose Fernandes Barbosa-Neto; Francois Sabot; Dave Kudrna; Jetty Siva S Ammiraju; Stephan C Schuster; John E Carlson; Erika Sallet; Thomas Schiex; Anne Dievart; Melissa Kramer; Laura Gelley; Zi Shi; Aurélie Bérard; Christopher Viot; Michel Boccara; Ange Marie Risterucci; Valentin Guignon; Xavier Sabau; Michael J Axtell; Zhaorong Ma; Yufan Zhang; Spencer Brown; Mickael Bourge; Wolfgang Golser; Xiang Song; Didier Clement; Ronan Rivallan; Mathias Tahi; Joseph Moroh Akaza; Bertrand Pitollat; Karina Gramacho; Angélique D'Hont; Dominique Brunel; Diogenes Infante; Ismael Kebe; Pierre Costet; Rod Wing; W Richard McCombie; Emmanuel Guiderdoni; Francis Quetier; Olivier Panaud; Patrick Wincker; Stephanie Bocs; Claire Lanaud
Journal:  Nat Genet       Date:  2010-12-26       Impact factor: 38.330

2.  Grass microRNA gene paleohistory unveils new insights into gene dosage balance in subgenome partitioning after whole-genome duplication.

Authors:  Michael Abrouk; Rongzhi Zhang; Florent Murat; Aili Li; Caroline Pont; Long Mao; Jérôme Salse
Journal:  Plant Cell       Date:  2012-05-15       Impact factor: 11.277

Review 3.  Emerging knowledge from genome sequencing of crop species.

Authors:  Delfina Barabaschi; Davide Guerra; Katia Lacrima; Paolo Laino; Vania Michelotti; Simona Urso; Giampiero Valè; Luigi Cattivelli
Journal:  Mol Biotechnol       Date:  2012-03       Impact factor: 2.695

4.  Dynamic nucleotide-binding site and leucine-rich repeat-encoding genes in the grass family.

Authors:  Sha Luo; Yu Zhang; Qun Hu; Jiongjiong Chen; Kunpeng Li; Chen Lu; Hui Liu; Wen Wang; Hanhui Kuang
Journal:  Plant Physiol       Date:  2012-03-15       Impact factor: 8.340

5.  Phylogenetic analyses provide the first insights into the evolution of OVATE family proteins in land plants.

Authors:  Di Liu; Wei Sun; Yaowu Yuan; Ning Zhang; Alice Hayward; Yongliang Liu; Ying Wang
Journal:  Ann Bot       Date:  2014-05-08       Impact factor: 4.357

6.  Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy.

Authors:  Andrew J Severin; Steven B Cannon; Michelle M Graham; David Grant; Randy C Shoemaker
Journal:  Plant Cell       Date:  2011-09-13       Impact factor: 11.277

7.  Comparative genetic mapping and genomic region collinearity analysis of the powdery mildew resistance gene Pm41.

Authors:  Zhenzhong Wang; Yu Cui; Yongxing Chen; Deyun Zhang; Yong Liang; Dong Zhang; Qiuhong Wu; Jingzhong Xie; Shuhong Ouyang; Delin Li; Yinlian Huang; Ping Lu; Guoxin Wang; Meihua Yu; Shenghui Zhou; Qixin Sun; Zhiyong Liu
Journal:  Theor Appl Genet       Date:  2014-06-07       Impact factor: 5.699

8.  Fine mapping and comparative genomics integration of two quantitative trait loci controlling resistance to powdery mildew in a Spanish barley landrace.

Authors:  Cristina Silvar; Dragan Perovic; Uwe Scholz; Ana M Casas; Ernesto Igartua; Frank Ordon
Journal:  Theor Appl Genet       Date:  2011-09-08       Impact factor: 5.699

9.  Pectin methylesterase inhibitor (PMEI) family can be related to male sterility in Chinese cabbage (Brassica rapa ssp. pekinensis).

Authors:  Chong Tan; Zhiyong Liu; Shengnan Huang; Chengyu Li; Jie Ren; Xiaoyan Tang; Wenjie Liu; Shenling Peng; Hui Feng
Journal:  Mol Genet Genomics       Date:  2017-11-08       Impact factor: 3.291

10.  Wheat Zapper: a flexible online tool for colinearity studies in grass genomes.

Authors:  Loai M Alnemer; Raed I Seetan; Filippo M Bassi; Charith Chitraranjan; Adam Helsene; Paul Loree; Steve Bou Goshn; Yong Q Gu; Ming-Cheng Luo; M Javed Iqbal; Gerard R Lazo; Anne M Denton; Shahryar F Kianian
Journal:  Funct Integr Genomics       Date:  2013-03-10       Impact factor: 3.410

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