Literature DB >> 20627170

High-speed atomic force microscopy techniques for observing dynamic biomolecular processes.

Daisuke Yamamoto1, Takayuki Uchihashi, Noriyuki Kodera, Hayato Yamashita, Shingo Nishikori, Teru Ogura, Mikihiro Shibata, Toshio Ando.   

Abstract

Atomic force microscopy (AFM) enables direct visualization of single-protein molecules in liquids at submolecular resolution. High-speed AFM further makes it possible to visualize dynamic biomolecular processes at subsecond resolution. However, dynamic imaging of biomolecular processes imposes various requirements on "wet techniques" and imaging conditions, which are often different from those for static imaging. This chapter first surveys the imposed requirements, then focuses on practical techniques associated with dynamic imaging, highlighting the preparation of substrate surfaces, and presents examples of the use of these techniques. Copyright (c) 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20627170     DOI: 10.1016/S0076-6879(10)75020-5

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN: 0076-6879            Impact factor:   1.600


  13 in total

1.  Guide to video recording of structure dynamics and dynamic processes of proteins by high-speed atomic force microscopy.

Authors:  Takayuki Uchihashi; Noriyuki Kodera; Toshio Ando
Journal:  Nat Protoc       Date:  2012-05-24       Impact factor: 13.491

2.  Video imaging of walking myosin V by high-speed atomic force microscopy.

Authors:  Noriyuki Kodera; Daisuke Yamamoto; Ryoki Ishikawa; Toshio Ando
Journal:  Nature       Date:  2010-10-10       Impact factor: 49.962

3.  Cofilin-induced unidirectional cooperative conformational changes in actin filaments revealed by high-speed atomic force microscopy.

Authors:  Kien Xuan Ngo; Noriyuki Kodera; Eisaku Katayama; Toshio Ando; Taro Q P Uyeda
Journal:  Elife       Date:  2015-02-02       Impact factor: 8.140

4.  Nanoscale structure and dynamics of ABOBEC3G complexes with single-stranded DNA.

Authors:  Luda S Shlyakhtenko; Alexander Y Lushnikov; Atsushi Miyagi; Ming Li; Reuben S Harris; Yuri L Lyubchenko
Journal:  Biochemistry       Date:  2012-07-31       Impact factor: 3.162

5.  Mica functionalization for imaging of DNA and protein-DNA complexes with atomic force microscopy.

Authors:  Luda S Shlyakhtenko; Alexander A Gall; Yuri L Lyubchenko
Journal:  Methods Mol Biol       Date:  2013

Review 6.  Directly watching biomolecules in action by high-speed atomic force microscopy.

Authors:  Toshio Ando
Journal:  Biophys Rev       Date:  2017-07-31

7.  Tuning membrane protein mobility by confinement into nanodomains.

Authors:  Andreas Karner; Benedikt Nimmervoll; Birgit Plochberger; Enrico Klotzsch; Andreas Horner; Denis G Knyazev; Roland Kuttner; Klemens Winkler; Lukas Winter; Christine Siligan; Nicole Ollinger; Peter Pohl; Johannes Preiner
Journal:  Nat Nanotechnol       Date:  2016-11-14       Impact factor: 39.213

Review 8.  Filming biomolecular processes by high-speed atomic force microscopy.

Authors:  Toshio Ando; Takayuki Uchihashi; Simon Scheuring
Journal:  Chem Rev       Date:  2014-01-30       Impact factor: 60.622

Review 9.  Imaging and Force Recognition of Single Molecular Behaviors Using Atomic Force Microscopy.

Authors:  Mi Li; Dan Dang; Lianqing Liu; Ning Xi; Yuechao Wang
Journal:  Sensors (Basel)       Date:  2017-01-22       Impact factor: 3.576

10.  Controlling the stoichiometry and strand polarity of a tetramolecular G-quadruplex structure by using a DNA origami frame.

Authors:  Arivazhagan Rajendran; Masayuki Endo; Kumi Hidaka; Phong Lan Thao Tran; Jean-Louis Mergny; Hiroshi Sugiyama
Journal:  Nucleic Acids Res       Date:  2013-07-17       Impact factor: 16.971

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