Literature DB >> 20622885

Genome sequence of the model mushroom Schizophyllum commune.

Robin A Ohm1, Jan F de Jong, Luis G Lugones, Andrea Aerts, Erika Kothe, Jason E Stajich, Ronald P de Vries, Eric Record, Anthony Levasseur, Scott E Baker, Kirk A Bartholomew, Pedro M Coutinho, Susann Erdmann, Thomas J Fowler, Allen C Gathman, Vincent Lombard, Bernard Henrissat, Nicole Knabe, Ursula Kües, Walt W Lilly, Erika Lindquist, Susan Lucas, Jon K Magnuson, François Piumi, Marjatta Raudaskoski, Asaf Salamov, Jeremy Schmutz, Francis W M R Schwarze, Patricia A vanKuyk, J Stephen Horton, Igor V Grigoriev, Han A B Wösten.   

Abstract

Much remains to be learned about the biology of mushroom-forming fungi, which are an important source of food, secondary metabolites and industrial enzymes. The wood-degrading fungus Schizophyllum commune is both a genetically tractable model for studying mushroom development and a likely source of enzymes capable of efficient degradation of lignocellulosic biomass. Comparative analyses of its 38.5-megabase genome, which encodes 13,210 predicted genes, reveal the species's unique wood-degrading machinery. One-third of the 471 genes predicted to encode transcription factors are differentially expressed during sexual development of S. commune. Whereas inactivation of one of these, fst4, prevented mushroom formation, inactivation of another, fst3, resulted in more, albeit smaller, mushrooms than in the wild-type fungus. Antisense transcripts may also have a role in the formation of fruiting bodies. Better insight into the mechanisms underlying mushroom formation should affect commercial production of mushrooms and their industrial use for producing enzymes and pharmaceuticals.

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Year:  2010        PMID: 20622885     DOI: 10.1038/nbt.1643

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  42 in total

1.  Changes in mate recognition through alterations of pheromones and receptors in the multisexual mushroom fungus Schizophyllum commune.

Authors:  T J Fowler; M F Mitton; L J Vaillancourt; C A Raper
Journal:  Genetics       Date:  2001-08       Impact factor: 4.562

2.  Comparing genomic expression patterns across species identifies shared transcriptional profile in aging.

Authors:  Steven A McCarroll; Coleen T Murphy; Sige Zou; Scott D Pletcher; Chen-Shan Chin; Yuh Nung Jan; Cynthia Kenyon; Cornelia I Bargmann; Hao Li
Journal:  Nat Genet       Date:  2004-01-18       Impact factor: 38.330

3.  Isolation of phosphate-solubilizing fungi from phosphate mines and their effect on wheat seedling growth.

Authors:  Chunqiao Xiao; Ruan Chi; Huan He; Guanzhou Qiu; Dianzuo Wang; Wenxue Zhang
Journal:  Appl Biochem Biotechnol       Date:  2009-03-10       Impact factor: 2.926

Review 4.  Molecular genetics of mating recognition in basidiomycete fungi.

Authors:  L A Casselton; N S Olesnicky
Journal:  Microbiol Mol Biol Rev       Date:  1998-03       Impact factor: 11.056

Review 5.  Mating-type genes for basidiomycete strain improvement in mushroom farming.

Authors:  E Kothe
Journal:  Appl Microbiol Biotechnol       Date:  2001-09       Impact factor: 4.813

Review 6.  Life with 6000 genes.

Authors:  A Goffeau; B G Barrell; H Bussey; R W Davis; B Dujon; H Feldmann; F Galibert; J D Hoheisel; C Jacq; M Johnston; E J Louis; H W Mewes; Y Murakami; P Philippsen; H Tettelin; S G Oliver
Journal:  Science       Date:  1996-10-25       Impact factor: 47.728

7.  Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78.

Authors:  Diego Martinez; Luis F Larrondo; Nik Putnam; Maarten D Sollewijn Gelpke; Katherine Huang; Jarrod Chapman; Kevin G Helfenbein; Preethi Ramaiya; J Chris Detter; Frank Larimer; Pedro M Coutinho; Bernard Henrissat; Randy Berka; Dan Cullen; Daniel Rokhsar
Journal:  Nat Biotechnol       Date:  2004-05-02       Impact factor: 54.908

8.  Crossing the boundary between the Balpha and Bbeta mating-type loci in Schizophyllum commune.

Authors:  Thomas J Fowler; Michael F Mitton; Eleanor I Rees; Carlene A Raper
Journal:  Fungal Genet Biol       Date:  2004-01       Impact factor: 3.495

9.  Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Authors:  Diego Martinez; Jean Challacombe; Ingo Morgenstern; David Hibbett; Monika Schmoll; Christian P Kubicek; Patricia Ferreira; Francisco J Ruiz-Duenas; Angel T Martinez; Phil Kersten; Kenneth E Hammel; Amber Vanden Wymelenberg; Jill Gaskell; Erika Lindquist; Grzegorz Sabat; Sandra Splinter Bondurant; Luis F Larrondo; Paulo Canessa; Rafael Vicuna; Jagjit Yadav; Harshavardhan Doddapaneni; Venkataramanan Subramanian; Antonio G Pisabarro; José L Lavín; José A Oguiza; Emma Master; Bernard Henrissat; Pedro M Coutinho; Paul Harris; Jon Karl Magnuson; Scott E Baker; Kenneth Bruno; William Kenealy; Patrik J Hoegger; Ursula Kües; Preethi Ramaiya; Susan Lucas; Asaf Salamov; Harris Shapiro; Hank Tu; Christine L Chee; Monica Misra; Gary Xie; Sarah Teter; Debbie Yaver; Tim James; Martin Mokrejs; Martin Pospisek; Igor V Grigoriev; Thomas Brettin; Dan Rokhsar; Randy Berka; Dan Cullen
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-04       Impact factor: 11.205

10.  A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Authors:  Eugene V Koonin; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Dmitri M Krylov; Kira S Makarova; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Igor B Rogozin; Sergei Smirnov; Alexander V Sorokin; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  Genome Biol       Date:  2004-01-15       Impact factor: 13.583

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  173 in total

1.  Transcriptome and functional analysis of mating in the basidiomycete Schizophyllum commune.

Authors:  Susann Erdmann; Daniela Freihorst; Marjatta Raudaskoski; Wolfgang Schmidt-Heck; Elke-Martina Jung; Dominik Senftleben; Erika Kothe
Journal:  Eukaryot Cell       Date:  2011-12-30

2.  A putative transcription factor LFC1 negatively regulates development and yield of winter mushroom.

Authors:  Taju Wu; Chengcheng Hu; Baogui Xie; Shenglong Wei; Long Zhang; Zixiong Zhu; Zhenying Zhang; Shaojie Li
Journal:  Appl Microbiol Biotechnol       Date:  2020-04-30       Impact factor: 4.813

3.  A novel ribonuclease with potent HIV-1 reverse transcriptase inhibitory activity from cultured mushroom Schizophyllum commune.

Authors:  Yong-Chang Zhao; Guo-Qing Zhang; Tzi-Bun Ng; He-Xiang Wang
Journal:  J Microbiol       Date:  2011-11-09       Impact factor: 3.422

4.  Nematotoxicity of Marasmius oreades agglutinin (MOA) depends on glycolipid binding and cysteine protease activity.

Authors:  Therese Wohlschlager; Alex Butschi; Katrin Zurfluh; Sibylle C Vonesch; Ulrich auf dem Keller; Peter Gehrig; Silvia Bleuler-Martinez; Michael O Hengartner; Markus Aebi; Markus Künzler
Journal:  J Biol Chem       Date:  2011-07-08       Impact factor: 5.157

Review 5.  Genome evolution in filamentous plant pathogens: why bigger can be better.

Authors:  Sylvain Raffaele; Sophien Kamoun
Journal:  Nat Rev Microbiol       Date:  2012-05-08       Impact factor: 60.633

6.  Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi.

Authors:  Robert Riley; Asaf A Salamov; Daren W Brown; Laszlo G Nagy; Dimitrios Floudas; Benjamin W Held; Anthony Levasseur; Vincent Lombard; Emmanuelle Morin; Robert Otillar; Erika A Lindquist; Hui Sun; Kurt M LaButti; Jeremy Schmutz; Dina Jabbour; Hong Luo; Scott E Baker; Antonio G Pisabarro; Jonathan D Walton; Robert A Blanchette; Bernard Henrissat; Francis Martin; Dan Cullen; David S Hibbett; Igor V Grigoriev
Journal:  Proc Natl Acad Sci U S A       Date:  2014-06-23       Impact factor: 11.205

Review 7.  Plant-polysaccharide-degrading enzymes from Basidiomycetes.

Authors:  Johanna Rytioja; Kristiina Hildén; Jennifer Yuzon; Annele Hatakka; Ronald P de Vries; Miia R Mäkelä
Journal:  Microbiol Mol Biol Rev       Date:  2014-12       Impact factor: 11.056

8.  dipSPAdes: Assembler for Highly Polymorphic Diploid Genomes.

Authors:  Yana Safonova; Anton Bankevich; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2015-03-03       Impact factor: 1.479

9.  Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi.

Authors:  Krisztina Krizsán; Éva Almási; Zsolt Merényi; Neha Sahu; Máté Virágh; Tamás Kószó; Stephen Mondo; Brigitta Kiss; Balázs Bálint; Ursula Kües; Kerrie Barry; Judit Cseklye; Botond Hegedüs; Bernard Henrissat; Jenifer Johnson; Anna Lipzen; Robin A Ohm; István Nagy; Jasmyn Pangilinan; Juying Yan; Yi Xiong; Igor V Grigoriev; David S Hibbett; László G Nagy
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-22       Impact factor: 11.205

10.  Characterization of Non-coding Regions in B Mating Loci of Agrocybe salicacola Groups: Target Sites for B Mating Type Identification.

Authors:  Weimin Chen; Hongmei Chai; Weixian Yang; Xiaolei Zhang; Yuhui Chen; YongChang Zhao
Journal:  Curr Microbiol       Date:  2017-04-10       Impact factor: 2.188

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