Literature DB >> 20621963

A user's guide to channelrhodopsin variants: features, limitations and future developments.

John Y Lin1.   

Abstract

Channelrhodopsins (ChRs) are light-activated channels from algae that provide these organisms with fast sensors to visible light for phototaxis. Since its discovery, channelrhodopsin-2 (ChR2) has been used as a research tool to depolarize membranes of excitable cells with light. Subsequent chimeragenesis, mutagenesis and bioinformatic approaches have introduced additional ChR variants, such as channelrhodopsin-2 with H134R mutation (ChR2/H134R), channelrhodopsin-2 with E123T mutation (ChETA), Volvox carteri channelrhodopsin-1 (VChR1), Volvox carteri channelrhodopsin-2 (VChR2), channelrhodopsin-2 with C128 or D156A mutations (ChR2/C128X/D156A), chimera D (ChD), chimera EF (ChEF) and chimera EF with I170V mutation (I170V). Each of these ChR variuants has unique features and limitations, but there are few resources summarizing and comparing these ChRs in a systematic manner. In this review, the seven following key properties of ChRs that have significant influences on their effectiveness as research tools are examined: conductance, selectivity, kinetics, desensitization, light sensitivity, spectral response and membrane trafficking. Using this information, valuable qualities and deficits of each ChR variant are summarized. Optimal uses and potential future improvements of ChRs as optogenetic tools are also discussed.

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Year:  2010        PMID: 20621963      PMCID: PMC2995811          DOI: 10.1113/expphysiol.2009.051961

Source DB:  PubMed          Journal:  Exp Physiol        ISSN: 0958-0670            Impact factor:   2.969


  20 in total

1.  Kinetic evaluation of photosensitivity in genetically engineered neurons expressing green algae light-gated channels.

Authors:  Toru Ishizuka; Masaaki Kakuda; Rikita Araki; Hiromu Yawo
Journal:  Neurosci Res       Date:  2005-11-17       Impact factor: 3.304

2.  Light activation of channelrhodopsin-2 in excitable cells of Caenorhabditis elegans triggers rapid behavioral responses.

Authors:  Georg Nagel; Martin Brauner; Jana F Liewald; Nona Adeishvili; Ernst Bamberg; Alexander Gottschalk
Journal:  Curr Biol       Date:  2005-12-20       Impact factor: 10.834

3.  Channelrhodopsin-2 and optical control of excitable cells.

Authors:  Feng Zhang; Li-Ping Wang; Edward S Boyden; Karl Deisseroth
Journal:  Nat Methods       Date:  2006-10       Impact factor: 28.547

4.  Photoactivation of channelrhodopsin.

Authors:  Oliver P Ernst; Pedro A Sánchez Murcia; Peter Daldrop; Satoshi P Tsunoda; Suneel Kateriya; Peter Hegemann
Journal:  J Biol Chem       Date:  2007-11-09       Impact factor: 5.157

5.  Molecular determinants differentiating photocurrent properties of two channelrhodopsins from chlamydomonas.

Authors:  Hongxia Wang; Yuka Sugiyama; Takuya Hikima; Eriko Sugano; Hiroshi Tomita; Tetsuo Takahashi; Toru Ishizuka; Hiromu Yawo
Journal:  J Biol Chem       Date:  2008-12-22       Impact factor: 5.157

6.  Red-shifted optogenetic excitation: a tool for fast neural control derived from Volvox carteri.

Authors:  Feng Zhang; Matthias Prigge; Florent Beyrière; Satoshi P Tsunoda; Joanna Mattis; Ofer Yizhar; Peter Hegemann; Karl Deisseroth
Journal:  Nat Neurosci       Date:  2008-04-23       Impact factor: 24.884

7.  Temporal control of immediate early gene induction by light.

Authors:  Philipp Schoenenberger; Daniela Gerosa; Thomas G Oertner
Journal:  PLoS One       Date:  2009-12-04       Impact factor: 3.240

8.  Spectral characteristics of the photocycle of channelrhodopsin-2 and its implication for channel function.

Authors:  Christian Bamann; Taryn Kirsch; Georg Nagel; Ernst Bamberg
Journal:  J Mol Biol       Date:  2007-11-01       Impact factor: 5.469

9.  Channelrhodopsin-2, a directly light-gated cation-selective membrane channel.

Authors:  Georg Nagel; Tanjef Szellas; Wolfram Huhn; Suneel Kateriya; Nona Adeishvili; Peter Berthold; Doris Ollig; Peter Hegemann; Ernst Bamberg
Journal:  Proc Natl Acad Sci U S A       Date:  2003-11-13       Impact factor: 11.205

10.  Channelrhodopsin-1 initiates phototaxis and photophobic responses in chlamydomonas by immediate light-induced depolarization.

Authors:  Peter Berthold; Satoshi P Tsunoda; Oliver P Ernst; Wolfgang Mages; Dietrich Gradmann; Peter Hegemann
Journal:  Plant Cell       Date:  2008-06-13       Impact factor: 11.277

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  120 in total

1.  Theoretical principles underlying optical stimulation of a channelrhodopsin-2 positive pyramidal neuron.

Authors:  Thomas J Foutz; Richard L Arlow; Cameron C McIntyre
Journal:  J Neurophysiol       Date:  2012-03-21       Impact factor: 2.714

2.  Mechanism for differential recruitment of orbitostriatal transmission during actions and outcomes following chronic alcohol exposure.

Authors:  Rafael Renteria; Christian Cazares; Emily T Baltz; Drew C Schreiner; Ege A Yalcinbas; Thomas Steinkellner; Thomas S Hnasko; Christina M Gremel
Journal:  Elife       Date:  2021-03-17       Impact factor: 8.140

3.  Molecular and genetic analysis of the Drosophila model of fragile X syndrome.

Authors:  Charles R Tessier; Kendal Broadie
Journal:  Results Probl Cell Differ       Date:  2012

4.  Monosynaptic glutamatergic activation of locus coeruleus and other lower brainstem noradrenergic neurons by the C1 cells in mice.

Authors:  Benjamin B Holloway; Ruth L Stornetta; Genrieta Bochorishvili; Alev Erisir; Kenneth E Viar; Patrice G Guyenet
Journal:  J Neurosci       Date:  2013-11-27       Impact factor: 6.167

5.  Clusters of cerebellar Purkinje cells control their afferent climbing fiber discharge.

Authors:  Joseph Chaumont; Nicolas Guyon; Antoine M Valera; Guillaume P Dugué; Daniela Popa; Paikan Marcaggi; Vanessa Gautheron; Sophie Reibel-Foisset; Stéphane Dieudonné; Aline Stephan; Michel Barrot; Jean-Christophe Cassel; Jean-Luc Dupont; Frédéric Doussau; Bernard Poulain; Fekrije Selimi; Clément Léna; Philippe Isope
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-17       Impact factor: 11.205

6.  Programmable wireless light-emitting diode stimulator for chronic stimulation of optogenetic molecules in freely moving mice.

Authors:  Mitsuhiro Hashimoto; Akihiro Hata; Takaki Miyata; Hajime Hirase
Journal:  Neurophotonics       Date:  2014-05-28       Impact factor: 3.593

Review 7.  Optogenetic investigation of neural circuits in vivo.

Authors:  Matthew E Carter; Luis de Lecea
Journal:  Trends Mol Med       Date:  2011-02-23       Impact factor: 11.951

8.  Making light work of fine-tuning channelrhodopsins.

Authors:  Andrew J Moorhouse; John M Power
Journal:  J Biol Chem       Date:  2019-03-15       Impact factor: 5.157

9.  Temporally precise control of single-neuron spiking by juxtacellular nanostimulation.

Authors:  Maik C Stüttgen; Lourens J P Nonkes; H Rüdiger A P Geis; Paul H Tiesinga; Arthur R Houweling
Journal:  J Neurophysiol       Date:  2017-01-11       Impact factor: 2.714

10.  Improved orange and red Ca²± indicators and photophysical considerations for optogenetic applications.

Authors:  Jiahui Wu; Lin Liu; Tomoki Matsuda; Yongxin Zhao; Aleksander Rebane; Mikhail Drobizhev; Yu-Fen Chang; Satoko Araki; Yoshiyuki Arai; Kelsey March; Thomas E Hughes; Ken Sagou; Takaki Miyata; Takeharu Nagai; Wen-Hong Li; Robert E Campbell
Journal:  ACS Chem Neurosci       Date:  2013-03-19       Impact factor: 4.418

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