| Literature DB >> 20621340 |
Gráinne M O'Regan1, Patrick M J H Kemperman, Aileen Sandilands, Huijia Chen, Linda E Campbell, Karin Kroboth, Rosemarie Watson, Marion Rowland, Gerwin J Puppels, W H Irwin McLean, Peter J Caspers, Alan D Irvine.
Abstract
BACKGROUND: Filaggrin (FLG) has a central role in the pathogenesis of atopic dermatitis (AD). FLG is a complex repetitive gene; highly population-specific mutations and multiple rare mutations make routine genotyping complex. Furthermore, the mechanistic pathways through which mutations in FLG predispose to AD are unclear.Entities:
Mesh:
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Year: 2010 PMID: 20621340 PMCID: PMC3627961 DOI: 10.1016/j.jaci.2010.04.038
Source DB: PubMed Journal: J Allergy Clin Immunol ISSN: 0091-6749 Impact factor: 10.793
Cohort characteristics according to final genotype
| Final | All mutations combined, no. (%) | Age (y), mean (SD) | Male sex, no. (%) | NESS, | Palmar hyperlinearity score | TEWL (g/m2/h), mean (SD) | NMF (AU), mean (SD) | Tyrosine peaks, no. (%) | Log IgE |
|---|---|---|---|---|---|---|---|---|---|
| Screened | n = 132 | n = 132 | n = 132 | n = 132 | n = 131 | n = 102 | n = 132 | n = 132 | n = 129 |
| +/+ | 53 (40.15) | 8.43 (3.76) | 32 (60.3) | 12.40 (2.39) | 0: 36 | 15.54 (9.34), n = 41 | 1.31 (0.24) | 1 (1.89) | 6.89 (2.29) |
| 1: 10 | |||||||||
| 2: 7 | |||||||||
| n = 53 | |||||||||
| +/− | 55 (41.66) | 8.2 (4.12) | 32 (58.2) | 11.28 (2.80) | 0: 8 | 15.59 (6.72), n = 44 | 0.80 (0.21) | 10 (18.18) | 6.56 (1.78) |
| 1: 23 | |||||||||
| 2: 23 | |||||||||
| n = 54 | |||||||||
| −/− | 24 (18.18) | 8.83 (4.16) | 15 (62.5) | 12.13 (2.52) | 0: 0 | 17.35 (7.37), n = 17 | 0.57 (0.15) | 19 (79.16) | 7.11 (1.50) |
| 1: 1 | |||||||||
| 2: 23 | |||||||||
| n=24 | |||||||||
| − | .84 | .97 | .07 | − | .70 | <.0001 | <.0001 | .48 |
AU, Arbitrary units.
Final FLG status after rescreening cohort for all mutations (FLG status before detection of novel mutations: FLG+/+, 41.7%; FLG+/−, 43.2%; and FLG−/−, 15.1%).
+/+, No FLG mutation; +/−, 1 FLG mutation; −/−, 2 FLG mutations.
NESS, Nottingham Eczema Severity Score. Palmar hyperlinearity score: 0, no hyperlinearity; 1, intermediate; 2, marked.
Hyperlinearity scoring and TEWL data are not available for 1 and 30 subjects, respectively.
Comparison of means among the 3 groups of FLG mutations using ANOVA.
Comparison of proportions using χ2 test for comparison of a 2 × 3 contingency table.
IgE data were positively skewed. The mean of the log-transformed data is presented.
Fig 1Box and whiskers plot of NMF by FLG genotypes (final genotype after full screening) showing the median (midline) and interquartile range corresponding to the length of the box.
ANOVA showing a statistically significant difference in NMF among the 3 FLG genotype subgroups together with 95% CIs
| Genotype | No. | Mean NMF | 95% CI | Comparison genotype | Mean difference | 95% CI mean difference | |
|---|---|---|---|---|---|---|---|
| 53 | 1.31 ± 0.24 | 1.24 to 1.37 | 0.51 | 0.40 to 0.60 | <.001 | ||
| 0.74 | 0.62 to 0.87 | <.001 | |||||
| 55 | 0.80 ± 0.21 | 0.74 to 0.86 | −0.51 | −0.60- to −0.41 | <.001 | ||
| 0.24 | 0.11 to 0.36 | <.001 | |||||
| 24 | 0.57 ± 0.15 | 0.50 to 0.63 | −0.74 | −8.86 to −0.61 | <.001 | ||
| −0.24 | −0.36 to −0.11 | <.001 |
A post hoc analysis with Tukey correction shows a statistically significant difference in mean NMF between each pairwise comparison for the 3 FLG genotype subgroups.
Tukey multiple comparisons.
Fig 2NMF cloud plot of values subcategorized after initial screening of 6 prevalent mutations. Circles indicate outliers who were rescreened for additional mutations. Colors indicate the final genotype after full screening. For each group, the number of patients and average NMF level (mean ± SD) are indicated in the figure. Group comparisons showing means and standard deviations by using ANOVA are presented in the text. a.u., Arbitrary units.
Fig 3Histogram of all nonaveraged NMF values subcategorized according to corrected mutational status. Blue bars are FLG+/+ subjects, green bars are FLG+/− subjects, and red bars are FLG−/− subjects. For each group, the number of Raman measurements and the average NMF level (mean ± SD) are indicated in the figure. FLG genotype group sizes are as follows: FLG−/−, 24; FLG+/−, 55; FLG+/+, 53. a.u., Arbitrary units.
Fig 4ROC curve for NMF AD (genotype +/− and −/−) compared with AD (genotype +/+). The AUC is 0.95 (95% CI, 0.91-0.99). The optimal cutoff point for mean NMF to distinguish AD from AD was 1.07 arbitrary units.
Fig 5Cloud plot of NMF values categorized by genotype (final genotype after full screening). Circles indicate subjects with an increased tyrosine signal (FLG+/+, n = 1; FLG+/−, n = 10; FLG−/−, n = 19). For each group, the number of patients and average NMF level (mean ± SD) are indicated in the figure. a.u., Arbitrary units.