Literature DB >> 20606716

Using DNA to Link Gold Nanoparticles, Polymers and Molecules: a Theoretical Perspective.

One-Sun Lee1, Tatiana R Prytkova, George C Schatz.   

Abstract

This Perspective describes theoretical studies aimed at understanding the structural and thermal properties of materials in which DNA is used to link gold nanoparticles, or polymers or organic molecules. Particularly in the case of gold nanoparticles, the materials derived from this structural motif have proven to be important for biological sensing and other applications, however additional applications may arise as a result of recent advances in the preparation of crystalline materials based on DNA-linked particles. From a theory perspective these are challenging materials to describe due to the large number of atoms, and the polyelectrolyte character of DNA, however there has been important progress recently using all-atom and coarse-grained molecular dynamics, and with analytical theory. Among topics that we discuss are the structure and density of DNA when attached to gold particles, and the size and melting properties of DNA-linked nanoparticles in different environments.

Entities:  

Year:  2010        PMID: 20606716      PMCID: PMC2893743          DOI: 10.1021/jz100435a

Source DB:  PubMed          Journal:  J Phys Chem Lett        ISSN: 1948-7185            Impact factor:   6.475


  29 in total

1.  Surface and bulk dissolution properties, and selectivity of DNA-linked nanoparticle assemblies.

Authors:  D B Lukatsky; Daan Frenkel
Journal:  J Chem Phys       Date:  2005-06-01       Impact factor: 3.488

2.  Maximizing DNA loading on a range of gold nanoparticle sizes.

Authors:  Sarah J Hurst; Abigail K R Lytton-Jean; Chad A Mirkin
Journal:  Anal Chem       Date:  2006-12-15       Impact factor: 6.986

3.  Molecular dynamics studies of ion distributions for DNA duplexes and DNA clusters: salt effects and connection to DNA melting.

Authors:  Hai Long; Alexander Kudlay; George C Schatz
Journal:  J Phys Chem B       Date:  2006-02-16       Impact factor: 2.991

4.  Sharp melting in DNA-linked nanostructure systems: thermodynamic models of DNA-linked polymers.

Authors:  Sung Yong Park; Julianne M Gibbs-Davis; Sonbinh T Nguyen; George C Schatz
Journal:  J Phys Chem B       Date:  2007-07-06       Impact factor: 2.991

5.  Molecular recognition and self-assembly special feature: Assembly and organization processes in DNA-directed colloidal crystallization.

Authors:  Robert J Macfarlane; Byeongdu Lee; Haley D Hill; Andrew J Senesi; Soenke Seifert; Chad A Mirkin
Journal:  Proc Natl Acad Sci U S A       Date:  2009-06-19       Impact factor: 11.205

6.  Cooperative melting in caged dimers of rigid small molecule-DNA hybrids.

Authors:  Brian R Stepp; Julianne M Gibbs-Davis; Dorothea L F Koh; SonBinh T Nguyen
Journal:  J Am Chem Soc       Date:  2008-07-03       Impact factor: 15.419

7.  Controlling the lattice parameters of gold nanoparticle FCC crystals with duplex DNA linkers.

Authors:  Haley D Hill; Robert J Macfarlane; Andrew J Senesi; Byeongdu Lee; Sung Yong Park; Chad A Mirkin
Journal:  Nano Lett       Date:  2008-06-24       Impact factor: 11.189

8.  Nano-flares for mRNA regulation and detection.

Authors:  Andrew E Prigodich; Dwight S Seferos; Matthew D Massich; David A Giljohann; Brandon C Lane; Chad A Mirkin
Journal:  ACS Nano       Date:  2009-08-25       Impact factor: 15.881

9.  Establishing the design rules for DNA-mediated programmable colloidal crystallization.

Authors:  Robert J Macfarlane; Matthew R Jones; Andrew J Senesi; Kaylie L Young; Byeongdu Lee; Jinsong Wu; Chad A Mirkin
Journal:  Angew Chem Int Ed Engl       Date:  2010-06-21       Impact factor: 15.336

10.  A fluorescence-based method for determining the surface coverage and hybridization efficiency of thiol-capped oligonucleotides bound to gold thin films and nanoparticles.

Authors:  L M Demers; C A Mirkin; R C Mucic; R A Reynolds; R L Letsinger; R Elghanian; G Viswanadham
Journal:  Anal Chem       Date:  2000-11-15       Impact factor: 6.986

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  8 in total

1.  Design and Implementation of Noble Metal Nanoparticle Cluster Arrays for Plasmon Enhanced Biosensing.

Authors:  Bo Yan; Svetlana V Boriskina; Björn M Reinhard
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2011-12-20       Impact factor: 4.126

2.  Folded Conformation, Cyclic Pentamer, Nano-Structure and PAD4 Binding Mode of YW3-56.

Authors:  Haimei Zhu; Yuji Wang; Yaonan Wang; Shurui Zhao; Ming Zhao; Lin Gui; Wenyun Xu; Xiangyun Amy Chen; Yanming Wang; Shiqi Peng
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2013-05-16       Impact factor: 4.126

3.  Probing DNA Stiffness through Optical Fluctuation Analysis of Plasmon Rulers.

Authors:  Tianhong Chen; Yan Hong; Björn M Reinhard
Journal:  Nano Lett       Date:  2015-07-06       Impact factor: 11.189

4.  A coarse-grained model of DNA with explicit solvation by water and ions.

Authors:  Robert C DeMille; Thomas E Cheatham; Valeria Molinero
Journal:  J Phys Chem B       Date:  2010-12-14       Impact factor: 2.991

5.  Complementary Oligonucleotide Conjugated Multicolor Carbon Dots for Intracellular Recognition of Biological Events.

Authors:  Indrajit Srivastava; Santosh K Misra; Sushant Bangru; Kingsley A Boateng; Julio A N T Soares; Aaron S Schwartz-Duval; Auinash Kalsotra; Dipanjan Pan
Journal:  ACS Appl Mater Interfaces       Date:  2020-03-26       Impact factor: 9.229

6.  Light-Mediated Directed Placement of Different DNA Sequences on Single Gold Nanoparticles.

Authors:  Emma E Coughlin; Jingtian Hu; Andrew Lee; Teri W Odom
Journal:  J Am Chem Soc       Date:  2021-03-04       Impact factor: 16.383

7.  Quantitative investigation of the poly-adenine DNA dissociation from the surface of gold nanoparticles.

Authors:  Weiwen Lu; Lihua Wang; Jiang Li; Yun Zhao; Ziang Zhou; Jiye Shi; Xiaolei Zuo; Dun Pan
Journal:  Sci Rep       Date:  2015-05-14       Impact factor: 4.379

Review 8.  DNA-Assembled Advanced Plasmonic Architectures.

Authors:  Na Liu; Tim Liedl
Journal:  Chem Rev       Date:  2018-01-31       Impact factor: 60.622

  8 in total

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