Literature DB >> 20599509

Ab initio high-resolution single-particle 3D reconstructions: the symmetry adapted functions way.

Leandro F Estrozi1, Jorge Navaza.   

Abstract

A protocol to attain high-resolution single-particle reconstructions is presented. The protocol is the concatenation of two procedures: one to obtain an ab initio low-resolution reconstruction, the other to determine a fixed point of the consecutive applications of fast projection matching and 3D reconstruction. It is a reciprocal space formulation where the Fourier coefficients of the 3D scattering density are expressed in terms of symmetry adapted functions and the 2D particle images are represented by their Fourier-Bessel transforms. The new protocol shows advantages in terms of speed and accuracy when compared to other methods currently in use. We illustrate its performance as applied to high-resolution cryo-electron micrographs of rotavirus.
Copyright © 2010 Elsevier Inc. All rights reserved.

Mesh:

Year:  2010        PMID: 20599509     DOI: 10.1016/j.jsb.2010.06.023

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  14 in total

1.  Mutational analysis of residues involved in nucleotide and divalent cation stabilization in the rotavirus RNA-dependent RNA polymerase catalytic pocket.

Authors:  Kristen M Ogden; Harish N Ramanathan; John T Patton
Journal:  Virology       Date:  2012-06-02       Impact factor: 3.616

Review 2.  Interactions among capsid proteins orchestrate rotavirus particle functions.

Authors:  Shane D Trask; Kristen M Ogden; John T Patton
Journal:  Curr Opin Virol       Date:  2012-05-16       Impact factor: 7.090

3.  Domain Organization of Vaccinia Virus Helicase-Primase D5.

Authors:  Stephanie Hutin; Wai Li Ling; Adam Round; Gregory Effantin; Stefan Reich; Frédéric Iseni; Nicolas Tarbouriech; Guy Schoehn; Wim Pascal Burmeister
Journal:  J Virol       Date:  2016-04-14       Impact factor: 5.103

Review 4.  Structural insights into the coupling of virion assembly and rotavirus replication.

Authors:  Shane D Trask; Sarah M McDonald; John T Patton
Journal:  Nat Rev Microbiol       Date:  2012-01-23       Impact factor: 60.633

5.  In situ structures of RNA-dependent RNA polymerase inside bluetongue virus before and after uncoating.

Authors:  Yao He; Sakar Shivakoti; Ke Ding; Yanxiang Cui; Polly Roy; Z Hong Zhou
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-26       Impact factor: 11.205

Review 6.  Near-atomic resolution reconstructions of icosahedral viruses from electron cryo-microscopy.

Authors:  Nikolaus Grigorieff; Stephen C Harrison
Journal:  Curr Opin Struct Biol       Date:  2011-02-18       Impact factor: 6.809

7.  Structure of ATP citrate lyase and the origin of citrate synthase in the Krebs cycle.

Authors:  Koen H G Verschueren; Clement Blanchet; Jan Felix; Ann Dansercoer; Dirk De Vos; Yehudi Bloch; Jozef Van Beeumen; Dmitri Svergun; Irina Gutsche; Savvas N Savvides; Kenneth Verstraete
Journal:  Nature       Date:  2019-04-03       Impact factor: 49.962

8.  Structure determination of feline calicivirus virus-like particles in the context of a pseudo-octahedral arrangement.

Authors:  Wim P Burmeister; Marlyse Buisson; Leandro F Estrozi; Guy Schoehn; Olivier Billet; Zahia Hannas; Cécile Sigoillot; Hervé Poulet
Journal:  PLoS One       Date:  2015-03-20       Impact factor: 3.240

9.  Structural insights into the Escherichia coli lysine decarboxylases and molecular determinants of interaction with the AAA+ ATPase RavA.

Authors:  Eaazhisai Kandiah; Diego Carriel; Julien Perard; Hélène Malet; Maria Bacia; Kaiyin Liu; Sze W S Chan; Walid A Houry; Sandrine Ollagnier de Choudens; Sylvie Elsen; Irina Gutsche
Journal:  Sci Rep       Date:  2016-04-15       Impact factor: 4.379

10.  Location of the dsRNA-dependent polymerase, VP1, in rotavirus particles.

Authors:  Leandro F Estrozi; Ethan C Settembre; Gaël Goret; Brian McClain; Xing Zhang; James Z Chen; Nikolaus Grigorieff; Stephen C Harrison
Journal:  J Mol Biol       Date:  2012-10-23       Impact factor: 5.469

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