Literature DB >> 20599239

Transcription through the HIV-1 nucleosomes: effects of the PBAF complex in Tat activated transcription.

Rebecca Easley1, Lawrence Carpio, Luke Dannenberg, Soyun Choi, Dowser Alani, Rachel Van Duyne, Irene Guendel, Zachary Klase, Emmanuel Agbottah, Kylene Kehn-Hall, Fatah Kashanchi.   

Abstract

The SWI/SNF complex remodels nucleosomes, allowing RNA Polymerase II access to the HIV-1 proviral DNA. It has not been determined which SWI/SNF complex (BAF or PBAF) remodels nucleosomes at the transcription start site. These complexes differ in only three subunits and determining which subunit(s) is required could explain the regulation of Tat activated transcription. We show that PBAF is required for chromatin remodeling at the nuc-1 start site and transcriptional elongation. We find that Baf200 is required to ensure activation at the LTR level and for viral production. Interestingly, the BAF complex was observed on the LTR whereas PBAF was present on both LTR and Env regions. We found that Tat activated transcription facilitates removal of histones H2A and H2B at the LTR, and that the FACT complex may be responsible for their removal. Finally, the BAF complex may play an important role in regulating splicing of the HIV-1 genome. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20599239      PMCID: PMC2923259          DOI: 10.1016/j.virol.2010.06.009

Source DB:  PubMed          Journal:  Virology        ISSN: 0042-6822            Impact factor:   3.616


  59 in total

1.  Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.

Authors:  Maria L Kireeva; Wendy Walter; Vladimir Tchernajenko; Vladimir Bondarenko; Mikhail Kashlev; Vasily M Studitsky
Journal:  Mol Cell       Date:  2002-03       Impact factor: 17.970

Review 2.  Cooperation between complexes that regulate chromatin structure and transcription.

Authors:  Geeta J Narlikar; Hua-Ying Fan; Robert E Kingston
Journal:  Cell       Date:  2002-02-22       Impact factor: 41.582

3.  Identification of a polymorphic, neuron-specific chromatin remodeling complex.

Authors:  Ivan Olave; Weidong Wang; Yutong Xue; Ann Kuo; Gerald R Crabtree
Journal:  Genes Dev       Date:  2002-10-01       Impact factor: 11.361

4.  RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach.

Authors:  Nevan J Krogan; Minkyu Kim; Seong Hoon Ahn; Guoqing Zhong; Michael S Kobor; Gerard Cagney; Andrew Emili; Ali Shilatifard; Stephen Buratowski; Jack F Greenblatt
Journal:  Mol Cell Biol       Date:  2002-10       Impact factor: 4.272

5.  Targeted derepression of the human immunodeficiency virus type 1 long terminal repeat by pyrrole-imidazole polyamides.

Authors:  Jason J Coull; Guocheng He; Christian Melander; Victor C Rucker; Peter B Dervan; David M Margolis
Journal:  J Virol       Date:  2002-12       Impact factor: 5.103

6.  Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes.

Authors:  Rajna Simic; Derek L Lindstrom; Hien G Tran; Kelli L Roinick; Patrick J Costa; Alexander D Johnson; Grant A Hartzog; Karen M Arndt
Journal:  EMBO J       Date:  2003-04-15       Impact factor: 11.598

7.  The Paf1 complex physically and functionally associates with transcription elongation factors in vivo.

Authors:  Sharon L Squazzo; Patrick J Costa; Derek L Lindstrom; Kathryn E Kumer; Rajna Simic; Jennifer L Jennings; Andrew J Link; Karen M Arndt; Grant A Hartzog
Journal:  EMBO J       Date:  2002-04-02       Impact factor: 11.598

8.  A novel nuclear receptor corepressor complex, N-CoR, contains components of the mammalian SWI/SNF complex and the corepressor KAP-1.

Authors:  C Underhill; M S Qutob; S P Yee; J Torchia
Journal:  J Biol Chem       Date:  2000-12-22       Impact factor: 5.157

9.  Mammalian PRP4 kinase copurifies and interacts with components of both the U5 snRNP and the N-CoR deacetylase complexes.

Authors:  Graham Dellaire; Evgeny M Makarov; Jeff J M Cowger; Dasa Longman; Heidi G E Sutherland; Reinhard Lührmann; Joseph Torchia; Wendy A Bickmore
Journal:  Mol Cell Biol       Date:  2002-07       Impact factor: 4.272

10.  Effect of SWI/SNF chromatin remodeling complex on HIV-1 Tat activated transcription.

Authors:  Emmanuel Agbottah; Longwen Deng; Luke O Dannenberg; Anne Pumfery; Fatah Kashanchi
Journal:  Retrovirology       Date:  2006-08-07       Impact factor: 4.602

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  31 in total

1.  Essential role of ARID2 protein-containing SWI/SNF complex in tissue-specific gene expression.

Authors:  Fuhua Xu; Stephen Flowers; Elizabeth Moran
Journal:  J Biol Chem       Date:  2011-12-19       Impact factor: 5.157

Review 2.  Functional roles of HIV-1 Tat protein in the nucleus.

Authors:  Yana R Musinova; Eugene V Sheval; Carla Dib; Diego Germini; Yegor S Vassetzky
Journal:  Cell Mol Life Sci       Date:  2015-10-27       Impact factor: 9.261

Review 3.  Barriers for HIV Cure: The Latent Reservoir.

Authors:  Sergio Castro-Gonzalez; Marta Colomer-Lluch; Ruth Serra-Moreno
Journal:  AIDS Res Hum Retroviruses       Date:  2018-08-28       Impact factor: 2.205

Review 4.  HIV latency: experimental systems and molecular models.

Authors:  Shweta Hakre; Leonard Chavez; Kotaro Shirakawa; Eric Verdin
Journal:  FEMS Microbiol Rev       Date:  2012-05       Impact factor: 16.408

5.  Small Molecule Targeting of Specific BAF (mSWI/SNF) Complexes for HIV Latency Reversal.

Authors:  Christine A Marian; Mateusz Stoszko; Lili Wang; Matthew W Leighty; Elisa de Crignis; Chad A Maschinot; Jovylyn Gatchalian; Benjamin C Carter; Basudev Chowdhury; Diana C Hargreaves; Jeremy R Duvall; Gerald R Crabtree; Tokameh Mahmoudi; Emily C Dykhuizen
Journal:  Cell Chem Biol       Date:  2018-09-06       Impact factor: 8.116

6.  The Short Isoform of BRD4 Promotes HIV-1 Latency by Engaging Repressive SWI/SNF Chromatin-Remodeling Complexes.

Authors:  Ryan J Conrad; Parinaz Fozouni; Sean Thomas; Hendrik Sy; Qiang Zhang; Ming-Ming Zhou; Melanie Ott
Journal:  Mol Cell       Date:  2017-08-24       Impact factor: 17.970

7.  Novel Interactions between the Human T-Cell Leukemia Virus Type 1 Antisense Protein HBZ and the SWI/SNF Chromatin Remodeling Family: Implications for Viral Life Cycle.

Authors:  Ahlam Alasiri; Jorge Abboud Guerr; William W Hall; Noreen Sheehy
Journal:  J Virol       Date:  2019-07-30       Impact factor: 5.103

Review 8.  Viral-host interactions that control HIV-1 transcriptional elongation.

Authors:  Huasong Lu; Zichong Li; Yuhua Xue; Qiang Zhou
Journal:  Chem Rev       Date:  2013-06-24       Impact factor: 60.622

Review 9.  Targeting HIV transcription: the quest for a functional cure.

Authors:  Guillaume Mousseau; Sonia Mediouni; Susana T Valente
Journal:  Curr Top Microbiol Immunol       Date:  2015       Impact factor: 4.291

10.  Varying modulation of HIV-1 LTR activity by Baf complexes.

Authors:  Rachel Van Duyne; Irene Guendel; Aarthi Narayanan; Edward Gregg; Nazly Shafagati; Mudit Tyagi; Rebecca Easley; Zachary Klase; Sergei Nekhai; Kylene Kehn-Hall; Fatah Kashanchi
Journal:  J Mol Biol       Date:  2011-06-15       Impact factor: 5.469

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