Literature DB >> 20586489

Validation of a lanthanide tag for the analysis of protein dynamics by paramagnetic NMR spectroscopy.

Mathias A S Hass1, Peter H J Keizers, Anneloes Blok, Yoshitaka Hiruma, Marcellus Ubbink.   

Abstract

Paramagnetic lanthanide tags potentially can enhance the effects of microsecond to millisecond dynamics in proteins on NMR signals and provide structural information on lowly populated states encoded in the pseudocontact shifts. We have investigated the microsecond to millisecond mobility of a two-point attached lanthanide tag, CLaNP-5, using paramagnetic (1)H CPMG relaxation dispersion methods. CLaNP-5 loaded with Lu(3+), Yb(3+), or Tm(3+) was attached to three sites on the surface of two proteins, pseudoazurin and cytochrome c. The paramagnetic center causes large relaxation dispersion effects for two attachment sites, suggesting that local dynamics of the protein at the attachment site causes mobility of the paramagnetic center. At one site the relaxation dispersions are small and limited to the immediate environment of the tag. It is concluded that paramagnetic relaxation dispersion could represent a sensitive method to probe protein dynamics. However, the selection of a rigid attachment site is of critical importance.

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Year:  2010        PMID: 20586489     DOI: 10.1021/ja909508r

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  9 in total

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2.  Information content of long-range NMR data for the characterization of conformational heterogeneity.

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4.  A minor conformation of a lanthanide tag on adenylate kinase characterized by paramagnetic relaxation dispersion NMR spectroscopy.

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5.  Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains.

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Review 8.  Paramagnetic NMR in drug discovery.

Authors:  Charlotte A Softley; Mark J Bostock; Grzegorz M Popowicz; Michael Sattler
Journal:  J Biomol NMR       Date:  2020-06-10       Impact factor: 2.835

9.  Simultaneous use of solution NMR and X-ray data in REFMAC5 for joint refinement/detection of structural differences.

Authors:  Mauro Rinaldelli; Enrico Ravera; Vito Calderone; Giacomo Parigi; Garib N Murshudov; Claudio Luchinat
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  9 in total

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