Literature DB >> 20583124

Discovery and verification of amyotrophic lateral sclerosis biomarkers by proteomics.

Henrik Ryberg1, Jiyan An, Samuel Darko, Jonathan Llyle Lustgarten, Matt Jaffa, Vanathi Gopalakrishnan, David Lacomis, Merit Cudkowicz, Robert Bowser.   

Abstract

Recent studies using mass spectrometry have discovered candidate biomarkers for amyotrophic lateral sclerosis (ALS). However, those studies utilized small numbers of ALS and control subjects. Additional studies using larger subject cohorts are required to verify these candidate biomarkers. Cerebrospinal fluid (CSF) samples from 100 patients with ALS, 100 disease control, and 41 healthy control subjects were examined by mass spectrometry. Sixty-one mass spectral peaks exhibited altered levels between ALS and controls. Mass peaks for cystatin C and transthyretin were reduced in ALS, whereas mass peaks for posttranslational modified transthyretin and C-reactive protein (CRP) were increased. CRP levels were 5.84 +/- 1.01 ng/ml for controls and 11.24 +/- 1.52 ng/ml for ALS subjects, as determined by enzyme-linked immunoassay. This study verified prior mass spectrometry results for cystatin C and transthyretin in ALS. CRP levels were increased in the CSF of ALS patients, and cystatin C level correlated with survival in patients with limb-onset disease. Our biomarker panel predicted ALS with an overall accuracy of 82%.

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Year:  2010        PMID: 20583124      PMCID: PMC2975276          DOI: 10.1002/mus.21683

Source DB:  PubMed          Journal:  Muscle Nerve        ISSN: 0148-639X            Impact factor:   3.217


  39 in total

1.  Human neurons generate C-reactive protein and amyloid P: upregulation in Alzheimer's disease.

Authors:  K Yasojima; C Schwab; E G McGeer; P L McGeer
Journal:  Brain Res       Date:  2000-12-22       Impact factor: 3.252

2.  EPO-KB: a searchable knowledge base of biomarker to protein links.

Authors:  Jonathan L Lustgarten; Chad Kimmel; Henrik Ryberg; William Hogan
Journal:  Bioinformatics       Date:  2008-04-09       Impact factor: 6.937

3.  Proteome analysis of cerebrospinal fluid in amyotrophic lateral sclerosis (ALS).

Authors:  Johannes Brettschneider; Helga Mogel; Vera Lehmensiek; Tino Ahlert; Sigurd Süssmuth; Albert C Ludolph; Hayrettin Tumani
Journal:  Neurochem Res       Date:  2008-05-15       Impact factor: 3.996

4.  Decreased CSF-beta-amyloid 42 in Alzheimer's disease and amyotrophic lateral sclerosis may reflect mismetabolism of beta-amyloid induced by disparate mechanisms.

Authors:  Magnus Sjögren; Pia Davidsson; Anders Wallin; Ann-Kathrine Granérus; Eva Grundström; Håkan Askmark; Eugeen Vanmechelen; Kaj Blennow
Journal:  Dement Geriatr Cogn Disord       Date:  2002       Impact factor: 2.959

5.  Identification of a novel panel of cerebrospinal fluid biomarkers for Alzheimer's disease.

Authors:  A H Simonsen; J McGuire; V N Podust; H Davies; L Minthon; I Skoog; N Andreasen; A Wallin; G Waldemar; K Blennow
Journal:  Neurobiol Aging       Date:  2007-02-23       Impact factor: 4.673

Review 6.  The epidemiology of motor neuron diseases: a review of recent studies.

Authors:  P M Worms
Journal:  J Neurol Sci       Date:  2001-10-15       Impact factor: 3.181

7.  Levels of three inflammation markers, C-reactive protein, serum amyloid A protein and procalcitonin, in the serum and cerebrospinal fluid of patients with meningitis.

Authors:  N Shimetani; K Shimetani; M Mori
Journal:  Scand J Clin Lab Invest       Date:  2001       Impact factor: 1.713

8.  Analytical validation of serum proteomic profiling for diagnosis of prostate cancer: sources of sample bias.

Authors:  Dale McLerran; William E Grizzle; Ziding Feng; William L Bigbee; Lionel L Banez; Lisa H Cazares; Daniel W Chan; Jose Diaz; Elzbieta Izbicka; Jacob Kagan; David E Malehorn; Gunjan Malik; Denise Oelschlager; Alan Partin; Timothy Randolph; Nicole Rosenzweig; Shiv Srivastava; Sudhir Srivastava; Ian M Thompson; Mark Thornquist; Dean Troyer; Yutaka Yasui; Zhen Zhang; Liu Zhu; O John Semmes
Journal:  Clin Chem       Date:  2007-11-02       Impact factor: 8.327

9.  SELDI-TOF MS whole serum proteomic profiling with IMAC surface does not reliably detect prostate cancer.

Authors:  Dale McLerran; William E Grizzle; Ziding Feng; Ian M Thompson; William L Bigbee; Lisa H Cazares; Daniel W Chan; Jackie Dahlgren; Jose Diaz; Jacob Kagan; Daniel W Lin; Gunjan Malik; Denise Oelschlager; Alan Partin; Timothy W Randolph; Lori Sokoll; Shiv Srivastava; Sudhir Srivastava; Mark Thornquist; Dean Troyer; George L Wright; Zhen Zhang; Liu Zhu; O John Semmes
Journal:  Clin Chem       Date:  2007-11-16       Impact factor: 8.327

Review 10.  Protein biomarkers for amyotrophic lateral sclerosis.

Authors:  Henrik Ryberg; Robert Bowser
Journal:  Expert Rev Proteomics       Date:  2008-04       Impact factor: 3.940

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  49 in total

Review 1.  How can we improve clinical trials in amyotrophic lateral sclerosis?

Authors:  Paul H Gordon; Vincent Meininger
Journal:  Nat Rev Neurol       Date:  2011-09-27       Impact factor: 42.937

Review 2.  Predicting the risk of psychosis onset: advances and prospects.

Authors:  Eric V Strobl; Shaun M Eack; Vaidy Swaminathan; Shyam Visweswaran
Journal:  Early Interv Psychiatry       Date:  2012-07-08       Impact factor: 2.732

3.  U1 small nuclear ribonucleoprotein complex and RNA splicing alterations in Alzheimer's disease.

Authors:  Bing Bai; Chadwick M Hales; Ping-Chung Chen; Yair Gozal; Eric B Dammer; Jason J Fritz; Xusheng Wang; Qiangwei Xia; Duc M Duong; Craig Street; Gloria Cantero; Dongmei Cheng; Drew R Jones; Zhiping Wu; Yuxin Li; Ian Diner; Craig J Heilman; Howard D Rees; Hao Wu; Li Lin; Keith E Szulwach; Marla Gearing; Elliott J Mufson; David A Bennett; Thomas J Montine; Nicholas T Seyfried; Thomas S Wingo; Yi E Sun; Peng Jin; John Hanfelt; Donna M Willcock; Allan Levey; James J Lah; Junmin Peng
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-10       Impact factor: 11.205

4.  Motor neuron disease: urgently needed-biomarkers for amyotrophic lateral sclerosis.

Authors:  Albert C Ludolph
Journal:  Nat Rev Neurol       Date:  2011-01       Impact factor: 42.937

5.  A multiplexed serum biomarker immunoassay panel discriminates clinical lung cancer patients from high-risk individuals found to be cancer-free by CT screening.

Authors:  William L Bigbee; Vanathi Gopalakrishnan; Joel L Weissfeld; David O Wilson; Sanja Dacic; Anna E Lokshin; Jill M Siegfried
Journal:  J Thorac Oncol       Date:  2012-04       Impact factor: 15.609

6.  Transfer learning of classification rules for biomarker discovery and verification from molecular profiling studies.

Authors:  Philip Ganchev; David Malehorn; William L Bigbee; Vanathi Gopalakrishnan
Journal:  J Biomed Inform       Date:  2011-05-06       Impact factor: 6.317

7.  Retinoid signaling alterations in amyotrophic lateral sclerosis.

Authors:  Christi L Kolarcik; Robert Bowser
Journal:  Am J Neurodegener Dis       Date:  2012-07-23

8.  Impaired activation of ALS monocytes by exosomes.

Authors:  Lisa Zondler; Marisa S Feiler; Axel Freischmidt; Wolfgang P Ruf; Albert C Ludolph; Karin M Danzer; Jochen H Weishaupt
Journal:  Immunol Cell Biol       Date:  2016-09-12       Impact factor: 5.126

9.  Evaluation of a 4-protein serum biomarker panel-biglycan, annexin-A6, myeloperoxidase, and protein S100-A9 (B-AMP)-for the detection of esophageal adenocarcinoma.

Authors:  Ali H Zaidi; Vanathi Gopalakrishnan; Pashtoon M Kasi; Xuemei Zeng; Usha Malhotra; Jeya Balasubramanian; Shyam Visweswaran; Mai Sun; Melanie S Flint; Jon M Davison; Brian L Hood; Thomas P Conrads; Jacques J Bergman; William L Bigbee; Blair A Jobe
Journal:  Cancer       Date:  2014-08-05       Impact factor: 6.860

Review 10.  Cerebrospinal fluid and blood biomarkers for neurodegenerative dementias: An update of the Consensus of the Task Force on Biological Markers in Psychiatry of the World Federation of Societies of Biological Psychiatry.

Authors:  Piotr Lewczuk; Peter Riederer; Sid E O'Bryant; Marcel M Verbeek; Bruno Dubois; Pieter Jelle Visser; Kurt A Jellinger; Sebastiaan Engelborghs; Alfredo Ramirez; Lucilla Parnetti; Clifford R Jack; Charlotte E Teunissen; Harald Hampel; Alberto Lleó; Frank Jessen; Lidia Glodzik; Mony J de Leon; Anne M Fagan; José Luis Molinuevo; Willemijn J Jansen; Bengt Winblad; Leslie M Shaw; Ulf Andreasson; Markus Otto; Brit Mollenhauer; Jens Wiltfang; Martin R Turner; Inga Zerr; Ron Handels; Alexander G Thompson; Gunilla Johansson; Natalia Ermann; John Q Trojanowski; Ilker Karaca; Holger Wagner; Patrick Oeckl; Linda van Waalwijk van Doorn; Maria Bjerke; Dimitrios Kapogiannis; H Bea Kuiperij; Lucia Farotti; Yi Li; Brian A Gordon; Stéphane Epelbaum; Stephanie J B Vos; Catharina J M Klijn; William E Van Nostrand; Carolina Minguillon; Matthias Schmitz; Carla Gallo; Andrea Lopez Mato; Florence Thibaut; Simone Lista; Daniel Alcolea; Henrik Zetterberg; Kaj Blennow; Johannes Kornhuber
Journal:  World J Biol Psychiatry       Date:  2017-10-27       Impact factor: 4.132

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