Literature DB >> 20583015

RNA dynamics by design: biasing ensembles towards the ligand-bound state.

Andrew C Stelzer1, Jeremy D Kratz, Qi Zhang, Hashim M Al-Hashimi.   

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Year:  2010        PMID： 20583015      PMCID： PMC3319304          DOI： 10.1002/anie.201000814

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN： 1433-7851            Impact factor:   15.336


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  22 in total

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2.  Toward flexibility-activity relationships by NMR spectroscopy: dynamics of Pin1 ligands.

Authors:  Andrew T Namanja; Xiaodong J Wang; Bailing Xu; Ana Y Mercedes-Camacho; Brian D Wilson; Kimberly A Wilson; Felicia A Etzkorn; Jeffrey W Peng
Journal:  J Am Chem Soc       Date:  2010-04-28       Impact factor: 15.419

Review 3.  RNA structure prediction.

Authors:  D H Turner; N Sugimoto; S M Freier
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4.  Structural rearrangements of HIV-1 Tat-responsive RNA upon binding of neomycin B.

Authors:  C Faber; H Sticht; K Schweimer; P Rösch
Journal:  J Biol Chem       Date:  2000-07-07       Impact factor: 5.157

5.  Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium.

Authors:  N Tjandra; A Bax
Journal:  Science       Date:  1997-11-07       Impact factor: 47.728

6.  Conformation of the TAR RNA-arginine complex by NMR spectroscopy.

Authors:  J D Puglisi; R Tan; B J Calnan; A D Frankel; J R Williamson
Journal:  Science       Date:  1992-07-03       Impact factor: 47.728

7.  Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge.

Authors:  F Aboul-ela; J Karn; G Varani
Journal:  Nucleic Acids Res       Date:  1996-10-15       Impact factor: 16.971

8.  Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg2+-induced conformational stabilization.

Authors:  Stephen W Pitt; Ananya Majumdar; Alexander Serganov; Dinshaw J Patel; Hashim M Al-Hashimi
Journal:  J Mol Biol       Date:  2004-04-16       Impact factor: 5.469

9.  Mg2+-induced variations in the conformation and dynamics of HIV-1 TAR RNA probed using NMR residual dipolar couplings.

Authors:  Hashim M Al-Hashimi; Stephen W Pitt; Ananya Majumdar; Weijun Xu; Dinshaw J Patel
Journal:  J Mol Biol       Date:  2003-06-20       Impact factor: 5.469

10.  Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution.

Authors:  J R Tolman; J M Flanagan; M A Kennedy; J H Prestegard
Journal:  Proc Natl Acad Sci U S A       Date:  1995-09-26       Impact factor: 11.205
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  28 in total

Review 1.  Recognition of S-adenosylmethionine by riboswitches.

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Journal:  Wiley Interdiscip Rev RNA       Date:  2011-01-12       Impact factor: 9.957

Review 2.  Topological constraints: using RNA secondary structure to model 3D conformation, folding pathways, and dynamic adaptation.

Authors:  Maximillian H Bailor; Anthony M Mustoe; Charles L Brooks; Hashim M Al-Hashimi
Journal:  Curr Opin Struct Biol       Date:  2011-04-14       Impact factor: 6.809

3.  Molecular mechanism of GTPase activation at the signal recognition particle (SRP) RNA distal end.

Authors:  Kuang Shen; Yaqiang Wang; Yu-Hsien Hwang Fu; Qi Zhang; Juli Feigon; Shu-ou Shan
Journal:  J Biol Chem       Date:  2013-10-22       Impact factor: 5.157

Review 4.  Understanding the Contributions of Conformational Changes, Thermodynamics, and Kinetics of RNA-Small Molecule Interactions.

Authors:  Aline Umuhire Juru; Neeraj N Patwardhan; Amanda E Hargrove
Journal:  ACS Chem Biol       Date:  2019-05-01       Impact factor: 5.100

Review 5.  Approaches to Validate and Manipulate RNA Targets with Small Molecules in Cells.

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6.  Myotonic dystrophy type 1 RNA crystal structures reveal heterogeneous 1 × 1 nucleotide UU internal loop conformations.

Authors:  Amit Kumar; HaJeung Park; Pengfei Fang; Raman Parkesh; Min Guo; Kendall W Nettles; Matthew D Disney
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Review 7.  Methods to enable the design of bioactive small molecules targeting RNA.

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8.  Nucleotides adjacent to the ligand-binding pocket are linked to activity tuning in the purine riboswitch.

Authors:  Colby D Stoddard; Jeremy Widmann; Jeremiah J Trausch; Joan G Marcano-Velázquez; Rob Knight; Robert T Batey
Journal:  J Mol Biol       Date:  2013-02-26       Impact factor: 5.469

9.  A general method for constructing atomic-resolution RNA ensembles using NMR residual dipolar couplings: the basis for interhelical motions revealed.

Authors:  Loïc Salmon; Gavin Bascom; Ioan Andricioaei; Hashim M Al-Hashimi
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10.  Rapid Exchange Between Free and Bound States in RNA-Dendrimer Polyplexes: Implications on the Mechanism of Delivery and Release.

Authors:  Anisha Shakya; Casey A Dougherty; Yi Xue; Hashim M Al-Hashimi; Mark M Banaszak Holl
Journal:  Biomacromolecules       Date:  2015-12-11       Impact factor: 6.988
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