Literature DB >> 20581186

The genome sequence of the crenarchaeon Acidilobus saccharovorans supports a new order, Acidilobales, and suggests an important ecological role in terrestrial acidic hot springs.

Andrey V Mardanov1, Vitali A Svetlitchnyi, Alexey V Beletsky, Maria I Prokofeva, Elizaveta A Bonch-Osmolovskaya, Nikolai V Ravin, Konstantin G Skryabin.   

Abstract

Acidilobus saccharovorans is an anaerobic, organotrophic, thermoacidophilic crenarchaeon isolated from a terrestrial hot spring. We report the complete genome sequence of A. saccharovorans, which has permitted the prediction of genes for Embden-Meyerhof and Entner-Doudoroff pathways and genes associated with the oxidative tricarboxylic acid cycle. The electron transfer chain is branched with two sites of proton translocation and is linked to the reduction of elemental sulfur and thiosulfate. The genomic data suggest an important role of the order Acidilobales in thermoacidophilic ecosystems whereby its members can perform a complete oxidation of organic substrates, closing the anaerobic carbon cycle.

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Year:  2010        PMID: 20581186      PMCID: PMC2918975          DOI: 10.1128/AEM.00599-10

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  31 in total

1.  The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum.

Authors:  A Ruepp; W Graml; M L Santos-Martinez; K K Koretke; C Volker; H W Mewes; D Frishman; S Stocker; A N Lupas; W Baumeister
Journal:  Nature       Date:  2000-09-28       Impact factor: 49.962

2.  Improved prediction of signal peptides: SignalP 3.0.

Authors:  Jannick Dyrløv Bendtsen; Henrik Nielsen; Gunnar von Heijne; Søren Brunak
Journal:  J Mol Biol       Date:  2004-07-16       Impact factor: 5.469

3.  Asymmetric substitution patterns in the two DNA strands of bacteria.

Authors:  J R Lobry
Journal:  Mol Biol Evol       Date:  1996-05       Impact factor: 16.240

4.  tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Authors:  T M Lowe; S R Eddy
Journal:  Nucleic Acids Res       Date:  1997-03-01       Impact factor: 16.971

Review 5.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.

Authors:  S F Altschul; T L Madden; A A Schäffer; J Zhang; Z Zhang; W Miller; D J Lipman
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

6.  Acidilobus aceticus gen. nov., sp. nov., a novel anaerobic thermoacidophilic archaeon from continental hot vents in Kamchatka.

Authors:  M I Prokofeva; M L Miroshnichenko; N A Kostrikina; N A Chernyh; B B Kuznetsov; T P Tourova; E A Bonch-Osmolovskaya
Journal:  Int J Syst Evol Microbiol       Date:  2000-11       Impact factor: 2.747

7.  The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus.

Authors:  H P Klenk; R A Clayton; J F Tomb; O White; K E Nelson; K A Ketchum; R J Dodson; M Gwinn; E K Hickey; J D Peterson; D L Richardson; A R Kerlavage; D E Graham; N C Kyrpides; R D Fleischmann; J Quackenbush; N H Lee; G G Sutton; S Gill; E F Kirkness; B A Dougherty; K McKenney; M D Adams; B Loftus; S Peterson; C I Reich; L K McNeil; J H Badger; A Glodek; L Zhou; R Overbeek; J D Gocayne; J F Weidman; L McDonald; T Utterback; M D Cotton; T Spriggs; P Artiach; B P Kaine; S M Sykes; P W Sadow; K P D'Andrea; C Bowman; C Fujii; S A Garland; T M Mason; G J Olsen; C M Fraser; H O Smith; C R Woese; J C Venter
Journal:  Nature       Date:  1997-11-27       Impact factor: 49.962

8.  Caldisphaera lagunensis gen. nov., sp. nov., a novel thermoacidophilic crenarchaeote isolated from a hot spring at Mt Maquiling, Philippines.

Authors:  T Itoh; K Suzuki; P C Sanchez; T Nakase
Journal:  Int J Syst Evol Microbiol       Date:  2003-07       Impact factor: 2.747

9.  Genome sequence of Picrophilus torridus and its implications for life around pH 0.

Authors:  O Fütterer; A Angelov; H Liesegang; G Gottschalk; C Schleper; B Schepers; C Dock; G Antranikian; W Liebl
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-07       Impact factor: 11.205

10.  Reconstruction of the central carbohydrate metabolism of Thermoproteus tenax by use of genomic and biochemical data.

Authors:  Bettina Siebers; Britta Tjaden; Klaus Michalke; Christine Dörr; Hatim Ahmed; Melanie Zaparty; Paul Gordon; Christoph W Sensen; Arne Zibat; Hans-Peter Klenk; Stephan C Schuster; Reinhard Hensel
Journal:  J Bacteriol       Date:  2004-04       Impact factor: 3.490

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  16 in total

1.  Structures of β-glycosidase from acidilobus saccharovorans in complexes with tris and glycerol.

Authors:  A A Trofimov; K M Polyakov; A V Tikhonov; E Y Bezsudnova; P V Dorovatovskii; V M Gumerov; N V Ravin; K G Skryabin; V O Popov
Journal:  Dokl Biochem Biophys       Date:  2013-05-09       Impact factor: 0.788

2.  Extreme Thermophiles: Moving beyond single-enzyme biocatalysis.

Authors:  Andrew D Frock; Robert M Kelly
Journal:  Curr Opin Chem Eng       Date:  2012-11-12       Impact factor: 5.163

3.  Metagenomics survey unravels diversity of biogas microbiomes with potential to enhance productivity in Kenya.

Authors:  Samuel Mwangangi Muturi; Lucy Wangui Muthui; Paul Mwangi Njogu; Justus Mong'are Onguso; Francis Nyamu Wachira; Stephen Obol Opiyo; Roger Pelle
Journal:  PLoS One       Date:  2021-01-04       Impact factor: 3.240

4.  The Geoglobus acetivorans genome: Fe(III) reduction, acetate utilization, autotrophic growth, and degradation of aromatic compounds in a hyperthermophilic archaeon.

Authors:  Andrey V Mardanov; Galina B Slododkina; Alexander I Slobodkin; Alexey V Beletsky; Sergey N Gavrilov; Ilya V Kublanov; Elizaveta A Bonch-Osmolovskaya; Konstantin G Skryabin; Nikolai V Ravin
Journal:  Appl Environ Microbiol       Date:  2014-11-21       Impact factor: 4.792

5.  Analysis of the complete genome of Fervidococcus fontis confirms the distinct phylogenetic position of the order Fervidicoccales and suggests its environmental function.

Authors:  Alexander V Lebedinsky; Andrey V Mardanov; Ilya V Kublanov; Vadim M Gumerov; Alexey V Beletsky; Anna A Perevalova; Salima Kh Bidzhieva; Elizaveta A Bonch-Osmolovskaya; Konstantin G Skryabin; Nikolai V Ravin
Journal:  Extremophiles       Date:  2013-12-24       Impact factor: 2.395

6.  Involvement of intermediate sulfur species in biological reduction of elemental sulfur under acidic, hydrothermal conditions.

Authors:  Eric S Boyd; Gregory K Druschel
Journal:  Appl Environ Microbiol       Date:  2013-01-18       Impact factor: 4.792

7.  Predominant Acidilobus-like populations from geothermal environments in yellowstone national park exhibit similar metabolic potential in different hypoxic microbial communities.

Authors:  Z J Jay; D B Rusch; S G Tringe; C Bailey; R M Jennings; W P Inskeep
Journal:  Appl Environ Microbiol       Date:  2013-10-25       Impact factor: 4.792

8.  A novel highly thermostable xylanase stimulated by Ca2+ from Thermotoga thermarum: cloning, expression and characterization.

Authors:  Hao Shi; Yu Zhang; Xun Li; Yingjuan Huang; Liangliang Wang; Ye Wang; Huaihai Ding; Fei Wang
Journal:  Biotechnol Biofuels       Date:  2013-02-18       Impact factor: 6.040

9.  Phylogenomics of prokaryotic ribosomal proteins.

Authors:  Natalya Yutin; Pere Puigbò; Eugene V Koonin; Yuri I Wolf
Journal:  PLoS One       Date:  2012-05-16       Impact factor: 3.240

10.  Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry.

Authors:  William P Inskeep; Zackary J Jay; Markus J Herrgard; Mark A Kozubal; Douglas B Rusch; Susannah G Tringe; Richard E Macur; Ryan deM Jennings; Eric S Boyd; John R Spear; Francisco F Roberto
Journal:  Front Microbiol       Date:  2013-05-15       Impact factor: 5.640

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