Literature DB >> 20580404

The rate of spontaneous cleavage of the glycosidic bond of adenosine.

Randy B Stockbridge1, Gottfried K Schroeder, Richard Wolfenden.   

Abstract

Previous estimates of the rate of spontaneous cleavage of the glycosidic bond of adenosine were determined by extrapolating the rates of the acid- and base-catalyzed reactions to neutral pH. Here we show that cleavage also proceeds through a pH-independent mechanism. Rate constants were determined as a function of temperature at pH 7 and a linear Arrhenius plot was constructed. Uncatalyzed cleavage occurs with a rate constant of 3.7x10(-12)s(-1) at 25 degrees C, and the rate enhancement generated by the corresponding glycoside hydrolase is approximately 5x10(12)-fold. 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20580404      PMCID: PMC2918718          DOI: 10.1016/j.bioorg.2010.05.003

Source DB:  PubMed          Journal:  Bioorg Chem        ISSN: 0045-2068            Impact factor:   5.275


  18 in total

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Journal:  J Am Chem Soc       Date:  1972-11-29       Impact factor: 15.419

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Journal:  Hoppe Seylers Z Physiol Chem       Date:  1964

5.  Mutagenesis and crystallographic studies of Zymomonas mobilis tRNA-guanine transglycosylase reveal aspartate 102 as the active site nucleophile.

Authors:  C Romier; K Reuter; D Suck; R Ficner
Journal:  Biochemistry       Date:  1996-12-10       Impact factor: 3.162

6.  Purine-specific nucleoside N-ribohydrolase from Trypanosoma brucei brucei. Purification, specificity, and kinetic mechanism.

Authors:  D W Parkin
Journal:  J Biol Chem       Date:  1996-09-06       Impact factor: 5.157

7.  Transition state analogues for enzymes of nucleic acid metabolism.

Authors:  Vern L Schramm
Journal:  Nucleic Acids Res Suppl       Date:  2003

8.  Uridine-ribohydrolase is a key regulator in the uridine degradation pathway of Arabidopsis.

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Journal:  Plant Cell       Date:  2009-03-17       Impact factor: 11.277

9.  Rates of spontaneous disintegration of DNA and the rate enhancements produced by DNA glycosylases and deaminases.

Authors:  Gottfried K Schroeder; Richard Wolfenden
Journal:  Biochemistry       Date:  2007-11-01       Impact factor: 3.162

10.  Complete (1)H and (13)C NMR spectral assignment of alpha- and beta-adenosine, 2'-deoxyadenosine and their acetate derivatives.

Authors:  P Ciuffreda; S Casati; A Manzocchi
Journal:  Magn Reson Chem       Date:  2007-09       Impact factor: 2.447

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  6 in total

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4.  Hydrolytic Fitness of N-glycosyl Bonds: Comparing the Deglycosylation Kinetics of Modified, Alternative and Native Nucleosides.

Authors:  Andro C Rios; Hiu T Yu; Yitzhak Tor
Journal:  J Phys Org Chem       Date:  2015-03       Impact factor: 2.391

5.  Prediction of the maximum temperature for life based on the stability of metabolites to decomposition in water.

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Journal:  Life (Basel)       Date:  2015-03-26

Review 6.  Recent advances in synthetic approaches for medicinal chemistry of C-nucleosides.

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  6 in total

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