Literature DB >> 20568884

Assembly of viruses and the pseudo-law of mass action.

Alexander Yu Morozov1, Robijn F Bruinsma, Joseph Rudnick.   

Abstract

The self-assembly of the protein shell ("capsid") of a virus appears to obey the law of mass action (LMA) despite the fact that viral assembly is a nonequilibrium process. In this paper we examine a model for capsid assembly, the "assembly line model," that can be analyzed analytically. We show that, in this model, efficient viral assembly from a supersaturated solution is characterized by a shock front propagating in the assembly configuration space from small to large aggregate sizes. If this shock front can reach the size of assembled capsids, then capsid assembly follows either the LMA or a "pseudo" LMA that describes partitioning of capsid proteins between assembled capsids and a metastable, supersaturated solution of free proteins that decays logarithmically slowly. We show that the applicability of the LMA and the pseudo-LMA is governed by two dimensionless parameters: the dimensionless nucleation rate and the dimensionless line energy of incomplete capsids.

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Year:  2009        PMID: 20568884     DOI: 10.1063/1.3212694

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  26 in total

1.  A kinetic Zipper model and the assembly of tobacco mosaic virus.

Authors:  Daniela J Kraft; Willem K Kegel; Paul van der Schoot
Journal:  Biophys J       Date:  2012-06-19       Impact factor: 4.033

2.  Understanding the concentration dependence of viral capsid assembly kinetics--the origin of the lag time and identifying the critical nucleus size.

Authors:  Michael F Hagan; Oren M Elrad
Journal:  Biophys J       Date:  2010-03-17       Impact factor: 4.033

3.  Modeling Viral Capsid Assembly.

Authors:  Michael F Hagan
Journal:  Adv Chem Phys       Date:  2014       Impact factor: 1.000

4.  Mechanisms of kinetic trapping in self-assembly and phase transformation.

Authors:  Michael F Hagan; Oren M Elrad; Robert L Jack
Journal:  J Chem Phys       Date:  2011-09-14       Impact factor: 3.488

5.  Assembly Reactions of Hepatitis B Capsid Protein into Capsid Nanoparticles Follow a Narrow Path through a Complex Reaction Landscape.

Authors:  Roi Asor; Lisa Selzer; Christopher John Schlicksup; Zhongchao Zhao; Adam Zlotnick; Uri Raviv
Journal:  ACS Nano       Date:  2019-06-25       Impact factor: 15.881

6.  To build a virus on a nucleic acid substrate.

Authors:  Adam Zlotnick; J Zachary Porterfield; Joseph Che-Yen Wang
Journal:  Biophys J       Date:  2013-04-02       Impact factor: 4.033

7.  Applying molecular crowding models to simulations of virus capsid assembly in vitro.

Authors:  Gregory R Smith; Lu Xie; Byoungkoo Lee; Russell Schwartz
Journal:  Biophys J       Date:  2014-01-07       Impact factor: 4.033

8.  Molecular dynamics study of T = 3 capsid assembly.

Authors:  D C Rapaport
Journal:  J Biol Phys       Date:  2018-04-02       Impact factor: 1.365

Review 9.  Quantitative computational models of molecular self-assembly in systems biology.

Authors:  Marcus Thomas; Russell Schwartz
Journal:  Phys Biol       Date:  2017-05-23       Impact factor: 2.583

Review 10.  Physical, chemical, and synthetic virology: Reprogramming viruses as controllable nanodevices.

Authors:  Maria Yanqing Chen; Susan S Butler; Weitong Chen; Junghae Suh
Journal:  Wiley Interdiscip Rev Nanomed Nanobiotechnol       Date:  2018-11-08
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